Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IF707_RS13390 Genome accession   NZ_CP062376
Coordinates   2728631..2729101 (+) Length   156 a.a.
NCBI ID   WP_000934760.1    Uniprot ID   A0AAN2D761
Organism   Staphylococcus aureus strain NAS_AN_099     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2703424..2735672 2728631..2729101 within 0


Gene organization within MGE regions


Location: 2703424..2735672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF707_RS13235 (IF707_13165) - 2703424..2704050 (-) 627 WP_000522384.1 nitroreductase family protein -
  IF707_RS13240 (IF707_13170) - 2704247..2705506 (+) 1260 WP_000120323.1 SdrH family protein -
  IF707_RS13245 (IF707_13175) mroQ 2705531..2706274 (-) 744 WP_000197635.1 CPBP family intramembrane glutamic endopeptidase MroQ -
  IF707_RS13250 (IF707_13180) groES 2706449..2706733 (+) 285 WP_000917289.1 co-chaperone GroES -
  IF707_RS13255 (IF707_13185) groL 2706809..2708425 (+) 1617 WP_000240645.1 chaperonin GroEL -
  IF707_RS13260 (IF707_13190) - 2708956..2710263 (-) 1308 WP_001045085.1 TrkH family potassium uptake protein -
  IF707_RS13265 (IF707_13195) - 2710424..2711335 (+) 912 WP_000825510.1 iron-hydroxamate ABC transporter substrate-binding protein -
  IF707_RS13270 (IF707_13200) - 2711397..2712241 (+) 845 Protein_2576 class I SAM-dependent methyltransferase -
  IF707_RS13275 (IF707_13205) - 2712614..2713837 (-) 1224 WP_000206635.1 ArgE/DapE family deacylase -
  IF707_RS13280 (IF707_13210) lukH 2714273..2715325 (+) 1053 WP_000791404.1 bi-component leukocidin LukGH subunit H -
  IF707_RS13285 (IF707_13215) lukG 2715347..2716363 (+) 1017 WP_000595401.1 bi-component leukocidin LukGH subunit G -
  IF707_RS13290 (IF707_13220) sph 2716864..2717694 (-) 831 Protein_2580 sphingomyelin phosphodiesterase -
  IF707_RS13295 (IF707_13225) - 2717745..2718782 (-) 1038 WP_000857176.1 site-specific integrase -
  IF707_RS13300 (IF707_13230) - 2718890..2719504 (+) 615 WP_000191459.1 hypothetical protein -
  IF707_RS13305 (IF707_13235) - 2719501..2719647 (-) 147 WP_001013104.1 hypothetical protein -
  IF707_RS13310 (IF707_13240) - 2719683..2719865 (-) 183 WP_000705240.1 hypothetical protein -
  IF707_RS13315 (IF707_13245) - 2720065..2720835 (-) 771 WP_031783378.1 S24 family peptidase -
  IF707_RS13320 (IF707_13250) - 2720994..2721218 (+) 225 WP_000338185.1 DUF739 family protein -
  IF707_RS13325 (IF707_13255) - 2721236..2721496 (+) 261 WP_000435341.1 transcriptional regulator -
  IF707_RS13330 (IF707_13260) - 2721520..2722059 (-) 540 WP_000351243.1 hypothetical protein -
  IF707_RS13335 (IF707_13265) - 2722116..2722865 (+) 750 WP_001148337.1 phage antirepressor KilAC domain-containing protein -
  IF707_RS13340 (IF707_13270) - 2722881..2723078 (+) 198 WP_001148861.1 hypothetical protein -
  IF707_RS13345 (IF707_13275) - 2723109..2723249 (+) 141 WP_000939496.1 hypothetical protein -
  IF707_RS13350 (IF707_13280) - 2723264..2723896 (-) 633 WP_000275058.1 hypothetical protein -
  IF707_RS13355 (IF707_13285) - 2723955..2724275 (+) 321 WP_001120197.1 DUF771 domain-containing protein -
  IF707_RS13360 (IF707_13290) - 2724272..2724433 (+) 162 WP_000066020.1 DUF1270 domain-containing protein -
  IF707_RS13365 (IF707_13295) - 2724526..2724786 (+) 261 WP_000291488.1 DUF1108 family protein -
  IF707_RS13370 (IF707_13300) - 2724795..2725058 (+) 264 WP_001205732.1 hypothetical protein -
  IF707_RS13375 (IF707_13305) - 2725067..2727010 (+) 1944 WP_031783377.1 AAA family ATPase -
  IF707_RS13380 (IF707_13310) - 2727012..2727932 (+) 921 WP_000138475.1 recombinase RecT -
  IF707_RS13385 (IF707_13315) - 2728013..2728630 (+) 618 WP_345790522.1 MBL fold metallo-hydrolase -
  IF707_RS13390 (IF707_13320) ssbA 2728631..2729101 (+) 471 WP_000934760.1 single-stranded DNA-binding protein Machinery gene
  IF707_RS13395 (IF707_13325) - 2729131..2730024 (+) 894 WP_000148335.1 DnaD domain-containing protein -
  IF707_RS13400 (IF707_13330) - 2730031..2730249 (+) 219 WP_000338527.1 hypothetical protein -
  IF707_RS13405 (IF707_13335) - 2730258..2730662 (+) 405 WP_000401978.1 RusA family crossover junction endodeoxyribonuclease -
  IF707_RS13410 (IF707_13340) - 2730675..2731045 (+) 371 Protein_2604 SA1788 family PVL leukocidin-associated protein -
  IF707_RS13415 (IF707_13345) - 2731049..2731291 (+) 243 WP_000131381.1 phi PVL orf 51-like protein -
  IF707_RS13420 (IF707_13350) - 2731306..2731557 (+) 252 WP_025174939.1 DUF1024 family protein -
  IF707_RS13425 (IF707_13355) - 2731547..2731720 (+) 174 WP_000028424.1 hypothetical protein -
  IF707_RS13430 (IF707_13360) - 2731721..2732002 (+) 282 WP_000454994.1 hypothetical protein -
  IF707_RS13435 (IF707_13365) - 2732003..2732164 (+) 162 WP_000889683.1 hypothetical protein -
  IF707_RS13440 (IF707_13370) - 2732179..2732712 (+) 534 WP_240017425.1 dUTP diphosphatase -
  IF707_RS13445 (IF707_13375) - 2732749..2732955 (+) 207 WP_000195826.1 DUF1381 domain-containing protein -
  IF707_RS13450 (IF707_13380) - 2732952..2733143 (+) 192 Protein_2612 hypothetical protein -
  IF707_RS13455 (IF707_13385) - 2733144..2733347 (+) 204 WP_001072793.1 hypothetical protein -
  IF707_RS13460 (IF707_13390) - 2733340..2733465 (+) 126 WP_031783376.1 transcriptional regulator -
  IF707_RS13465 (IF707_13395) - 2733465..2733665 (+) 201 WP_001570807.1 DUF1514 family protein -
  IF707_RS13470 (IF707_13400) - 2733688..2734149 (+) 462 WP_000282756.1 hypothetical protein -
  IF707_RS13475 (IF707_13405) - 2734264..2734716 (+) 453 WP_000406191.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  IF707_RS13480 (IF707_13410) - 2734732..2735076 (+) 345 WP_000817289.1 HNH endonuclease -
  IF707_RS13485 (IF707_13415) - 2735205..2735672 (+) 468 WP_000919026.1 phage terminase small subunit P27 family -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17641.52 Da        Isoelectric Point: 5.2672

>NTDB_id=488762 IF707_RS13390 WP_000934760.1 2728631..2729101(+) (ssbA) [Staphylococcus aureus strain NAS_AN_099]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=488762 IF707_RS13390 WP_000934760.1 2728631..2729101(+) (ssbA) [Staphylococcus aureus strain NAS_AN_099]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.372
  ssb Neisseria meningitidis MC58

32.948

100

0.365
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365