Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   KCG56_RS11610 Genome accession   NZ_CP073116
Coordinates   1530450..1530923 (+) Length   157 a.a.
NCBI ID   WP_283255478.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0073     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1525450..1535923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS07285 (KCG56_07360) - 1526199..1526495 (+) 297 WP_254321027.1 helix-turn-helix transcriptional regulator -
  KCG56_RS07290 (KCG56_07365) glnD 1526515..1529072 (+) 2558 Protein_1414 [protein-PII] uridylyltransferase -
  KCG56_RS07300 (KCG56_07370) pilA2 1529864..1530343 (+) 480 WP_283255477.1 pilin Machinery gene
  KCG56_RS11610 (KCG56_07375) pilA/pilA1 1530450..1530923 (+) 474 WP_283255478.1 pilin Machinery gene
  KCG56_RS07315 (KCG56_07380) - 1531328..1531810 (+) 483 WP_003684427.1 Lrp/AsnC family transcriptional regulator -
  KCG56_RS07320 (KCG56_07385) - 1531928..1532524 (+) 597 WP_254321028.1 DUF1415 domain-containing protein -
  KCG56_RS07325 (KCG56_07390) - 1532539..1532898 (+) 360 WP_254321029.1 YbaN family protein -
  KCG56_RS07330 (KCG56_07395) - 1533341..1534758 (+) 1418 Protein_1420 sodium:proton antiporter -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16920.36 Da        Isoelectric Point: 5.0787

>NTDB_id=486956 KCG56_RS11610 WP_283255478.1 1530450..1530923(+) (pilA/pilA1) [Neisseria subflava strain TT0073]
MNTPFQAQKGFTLIELMIVIAILGILVVIAVPTYQNYIGRAQASEALYLADDLKTEISIASAVNNRLPNAEDVSKQGAIG
VTAQRIGGTYIQNSGVTVEADTGKISIPFDKGQNKGKVLTLTPYRNNNDSTWLLNWQCGGTLDPMMVPAMCRDNSNG

Nucleotide


Download         Length: 474 bp        

>NTDB_id=486956 KCG56_RS11610 WP_283255478.1 1530450..1530923(+) (pilA/pilA1) [Neisseria subflava strain TT0073]
ATGAATACCCCATTTCAAGCCCAAAAAGGTTTTACCCTGATTGAGCTGATGATAGTTATCGCCATCCTCGGTATTCTGGT
TGTTATCGCCGTGCCTACCTACCAAAACTATATCGGCAGGGCGCAAGCCTCCGAAGCACTATACCTTGCCGATGACCTGA
AAACCGAAATCAGCATTGCCTCAGCGGTAAATAACCGCCTGCCCAATGCAGAGGATGTCAGCAAACAAGGCGCAATCGGC
GTTACCGCTCAACGCATCGGCGGCACATACATCCAAAACAGTGGCGTAACTGTAGAAGCAGATACAGGCAAAATCAGTAT
TCCTTTCGATAAAGGGCAAAACAAAGGCAAAGTCCTGACCCTGACCCCTTATCGAAATAATAACGATTCGACTTGGTTGC
TCAACTGGCAATGCGGCGGAACACTGGATCCGATGATGGTGCCCGCCATGTGCCGAGACAACTCAAACGGATAG

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(40-152)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Eikenella corrodens VA1

41.333

95.541

0.395
  comP Acinetobacter baylyi ADP1

38.411

96.178

0.369
  pilA2 Legionella pneumophila strain ERS1305867

38.255

94.904

0.363
  pilA/pilAI Pseudomonas stutzeri DSM 10701

37.748

96.178

0.363
  pilE Neisseria gonorrhoeae MS11

34.337

100

0.363