Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   IGW72_RS16440 Genome accession   NZ_CP062219
Coordinates   3573096..3573653 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain JT86     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3568096..3578653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGW72_RS16420 pilR 3569372..3570709 (+) 1338 WP_017002067.1 two-component system response regulator PilR Regulator
  IGW72_RS16425 thiO 3570755..3571849 (-) 1095 WP_023108762.1 glycine oxidase ThiO -
  IGW72_RS16430 - 3571984..3572493 (+) 510 WP_023088572.1 Tfp pilus assembly protein FimT/FimU -
  IGW72_RS16435 - 3572599..3573105 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  IGW72_RS16440 pilV 3573096..3573653 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  IGW72_RS16445 pilW 3573650..3574474 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  IGW72_RS16450 pilX 3574471..3575058 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  IGW72_RS16455 pilY1 3575070..3578561 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=486928 IGW72_RS16440 WP_003094697.1 3573096..3573653(+) (pilV) [Pseudomonas aeruginosa strain JT86]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=486928 IGW72_RS16440 WP_003094697.1 3573096..3573653(+) (pilV) [Pseudomonas aeruginosa strain JT86]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAAGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACATCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978