Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JNUCC31_RS14540 Genome accession   NZ_CP062165
Coordinates   3384320..3384805 (-) Length   161 a.a.
NCBI ID   WP_024629535.1    Uniprot ID   A0A7Y6BSP4
Organism   Paenibacillus sp. JNUCC-31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3379320..3389805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC31_RS14515 (JNUCC31_14515) opp4B 3379547..3380509 (-) 963 WP_192272152.1 oligopeptide ABC transporter permease -
  JNUCC31_RS14520 (JNUCC31_14520) - 3380517..3381449 (-) 933 WP_323374381.1 ABC transporter ATP-binding protein -
  JNUCC31_RS14525 (JNUCC31_14525) - 3381454..3382452 (-) 999 WP_192272154.1 ABC transporter ATP-binding protein -
  JNUCC31_RS14530 (JNUCC31_14530) - 3383181..3383774 (-) 594 WP_192272156.1 M15 family metallopeptidase -
  JNUCC31_RS14535 (JNUCC31_14535) rpsR 3383992..3384264 (-) 273 WP_017691433.1 30S ribosomal protein S18 -
  JNUCC31_RS14540 (JNUCC31_14540) ssbA 3384320..3384805 (-) 486 WP_024629535.1 single-stranded DNA-binding protein Machinery gene
  JNUCC31_RS14545 (JNUCC31_14545) rpsF 3384854..3385147 (-) 294 WP_024629534.1 30S ribosomal protein S6 -
  JNUCC31_RS14550 (JNUCC31_14550) - 3385349..3385543 (+) 195 WP_192272158.1 YjzC family protein -
  JNUCC31_RS14560 (JNUCC31_14560) - 3386163..3386372 (-) 210 WP_192272160.1 DUF951 domain-containing protein -
  JNUCC31_RS14565 (JNUCC31_14565) - 3386362..3387321 (-) 960 WP_192272162.1 mechanosensitive ion channel family protein -
  JNUCC31_RS14570 (JNUCC31_14570) - 3387336..3387599 (-) 264 WP_029880815.1 DUF3343 domain-containing protein -
  JNUCC31_RS14575 (JNUCC31_14575) yyaC 3387706..3388311 (+) 606 WP_062327701.1 spore protease YyaC -
  JNUCC31_RS14580 (JNUCC31_14580) - 3388286..3388786 (-) 501 WP_192272165.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17861.67 Da        Isoelectric Point: 4.8369

>NTDB_id=486723 JNUCC31_RS14540 WP_024629535.1 3384320..3384805(-) (ssbA) [Paenibacillus sp. JNUCC-31]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESANRDNNGGGGGQPMREEPSYGGGGRANNNNNSRSNNQDPFSDDGKPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=486723 JNUCC31_RS14540 WP_024629535.1 3384320..3384805(-) (ssbA) [Paenibacillus sp. JNUCC-31]
TTGTTGAACCGTGTCATTCTGATCGGCCGGTTAACCCGGGATCCTGAGTTGCGTTATACTCCAGCTGGAGTAGCAGTTAC
GCAATTTACTTTGGCAGTGGACAGACCGTTTACAAGCCAAGGGGGAGAACGGGAAGCGGATTTCATTCCGGTCGTAACCT
GGAGACAGCTTGCTGAGACTTGTGCAAACTATTTGCGCAAAGGACGCCTAGCTGCAGTCGAAGGACGCATTCAAGTACGG
AATTACGAGAATAACGAAGGAAAACGTGTATACGTGACCGAAGTCATTGCCGATAACGTCCGTTTCTTGGAGTCAGCTAA
CCGTGATAATAACGGTGGCGGCGGTGGGCAACCGATGCGTGAAGAGCCTTCTTATGGAGGCGGCGGGCGCGCGAACAATA
ACAATAATTCGCGTAGCAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATTGATATATCGGATGATGATTTGCCA
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y6BSP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.615
  ssb Latilactobacillus sakei subsp. sakei 23K

49.711

100

0.534
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.963

67.702

0.379
  ssb Neisseria meningitidis MC58

33.333

100

0.373
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.153

73.292

0.36
  ssb Neisseria gonorrhoeae MS11

32.584

100

0.36