Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IGX38_RS02925 Genome accession   NZ_CP062162
Coordinates   638448..640568 (+) Length   706 a.a.
NCBI ID   WP_242100547.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain 2020WEIHUA_G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 633448..645568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGX38_RS02905 (IGX38_02895) comM 635611..636675 (+) 1065 WP_045159370.1 pilus assembly protein PilM Machinery gene
  IGX38_RS02910 (IGX38_02900) pilN 636675..637247 (+) 573 WP_053527824.1 type 4a pilus biogenesis protein PilN -
  IGX38_RS02915 (IGX38_02905) pilO 637244..637870 (+) 627 WP_242100545.1 type 4a pilus biogenesis protein PilO -
  IGX38_RS02920 (IGX38_02910) pilP 637867..638394 (+) 528 WP_045159373.1 type 4a pilus biogenesis lipoprotein PilP -
  IGX38_RS02925 (IGX38_02915) pilQ 638448..640568 (+) 2121 WP_242100547.1 type IV pilus secretin PilQ Machinery gene
  IGX38_RS02930 (IGX38_02920) aroK 640572..641117 (+) 546 WP_017244294.1 shikimate kinase AroK -
  IGX38_RS02935 (IGX38_02925) aroB 641141..642244 (+) 1104 WP_011911792.1 3-dehydroquinate synthase -
  IGX38_RS02940 (IGX38_02930) - 642255..643844 (+) 1590 WP_242100549.1 AAA family ATPase -

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 75638.77 Da        Isoelectric Point: 4.7044

>NTDB_id=486607 IGX38_RS02925 WP_242100547.1 638448..640568(+) (pilQ) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
MNTTLSRLGVSLLAAFISPALLAANLNALDVAALPGDRVELKLAFDEPVASPRGYTLDQPARIALDLPGVSNNLGAKNRE
LGVGNARSVTVVEAQGRTRLIVNLTALVPYSTRVDGNNLFVVLGESSGTTSPAAASAAVTAPIAKSAPVKPMAAGKAIDN
IDFRRGEDGSGNVVITLSDPSVGSTIEEQGGKIRVVFAKAELPEALRVRLDVQDFATPVKFVDSTAQAGGASIAIEPTGR
YDYLAYQTDNKLTISVKPLTEEEADKRKADRFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVSGNITLRLQNV
PWDQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELESQRQIAELAPLRREVVQVNYAKAADIARLFQSVTSNGAV
AEDRGSIAVDDRTNNIIAYQTQERLDELRRIVAQLDIPVRQVMIEARIVEANVGYDKALGVRWGGNYTNDNWGLYGKDGA
IGRDEDGGRYLLPGTDKVGNFTLEDALAPVPFVDLGVLNSTAGIGIGYVSDHGILDLQLSAMEKTGNGEVVSQPKVVTAD
KETAKILKGAEIPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDAPDFANALNGVPPINKNEVNAKVLV
TDGETIVIGGVFSNSQISSIEKVPFLGDVPFVGRLFRRDIVEDKKSELLVFLTPRILNYRAVAVGQ

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=486607 IGX38_RS02925 WP_242100547.1 638448..640568(+) (pilQ) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
ATGAACACTACCCTTTCTCGCCTGGGCGTATCTCTGCTGGCGGCATTTATTTCGCCAGCACTGCTGGCGGCCAATCTCAA
CGCCTTGGATGTGGCTGCTTTGCCGGGCGATCGGGTTGAGTTGAAACTGGCATTTGACGAGCCTGTCGCGTCACCTCGTG
GCTACACGCTGGATCAGCCTGCACGCATTGCCCTGGATCTTCCAGGCGTATCCAACAACCTGGGGGCCAAAAACCGGGAG
CTGGGCGTTGGTAATGCGCGCAGCGTAACGGTCGTCGAGGCTCAAGGGCGCACCCGGCTCATCGTCAATCTGACCGCGCT
TGTTCCGTATTCCACTCGAGTGGATGGGAACAATCTGTTTGTCGTGCTGGGAGAGAGCTCGGGGACGACCAGCCCTGCGG
CTGCATCCGCCGCGGTCACTGCTCCGATTGCCAAGTCTGCTCCGGTAAAGCCGATGGCGGCCGGCAAGGCGATCGACAAT
ATCGATTTTCGCCGCGGTGAGGATGGTTCCGGAAACGTGGTAATCACACTGTCCGATCCGTCGGTAGGTTCGACTATCGA
AGAGCAGGGAGGAAAGATCCGCGTTGTGTTCGCCAAGGCGGAGCTGCCTGAAGCACTGCGTGTTCGGCTCGACGTTCAGG
ATTTCGCTACGCCGGTGAAGTTTGTCGACTCGACCGCTCAGGCAGGTGGTGCCAGTATCGCCATCGAGCCTACTGGGCGA
TACGATTATCTCGCCTACCAGACAGACAATAAGCTGACCATTAGCGTAAAGCCTCTTACAGAAGAAGAGGCCGATAAGCG
CAAGGCAGACCGTTTCGCCTATTCCGGTGAAAAGCTGTCGCTGAACTTCCAGGATATTGATGTCCGTTCCGTACTGCAGT
TGATCGCTGATTTTACCGATCTGAACTTGGTTGCCAGCGATACCGTGAGTGGCAATATCACTCTTCGTTTGCAGAACGTG
CCTTGGGATCAAGCGCTCGACCTGGTTTTGAAAACCAAGGGGCTGGATAAGCGGCAAGTCGGGAACGTGCTGCTCGTTGC
GCCAGCTGACGAAATCGCTGCGCGTGAACGCCAGGAACTCGAGTCGCAGCGGCAGATTGCCGAGCTTGCACCGTTGCGTC
GCGAGGTCGTGCAAGTCAACTATGCCAAGGCTGCGGACATTGCTCGCCTGTTCCAGTCAGTGACGAGCAACGGCGCCGTT
GCAGAGGATCGTGGCTCTATAGCGGTGGATGATCGCACCAATAACATCATCGCTTATCAAACGCAGGAGCGACTTGACGA
GCTGCGTCGCATAGTCGCTCAGCTCGACATTCCTGTGCGGCAAGTGATGATCGAGGCGCGCATCGTTGAGGCGAATGTGG
GCTACGATAAAGCGCTTGGGGTTCGTTGGGGCGGAAACTACACCAACGACAATTGGGGCTTGTATGGCAAGGACGGTGCC
ATCGGTCGTGATGAAGATGGCGGTCGATATCTTCTCCCAGGTACAGACAAAGTCGGCAATTTTACCCTGGAAGATGCGTT
GGCCCCGGTTCCATTTGTCGATCTAGGAGTGCTTAACAGCACCGCCGGTATTGGGATTGGCTATGTCTCGGACCATGGAA
TCCTAGACCTTCAATTGTCGGCTATGGAGAAAACCGGTAACGGTGAAGTCGTCTCCCAACCAAAGGTGGTTACTGCGGAT
AAGGAAACGGCCAAGATCTTGAAAGGCGCGGAAATCCCCTACCAAGAAGCCAGTTCGAGTGGCGCAACGTCGACATCCTT
CAAGGAGGCAGCTCTTTCGCTTGAGGTGACGCCGCAGATCACGCCGGACAACCGCATTATCATGGAGGTCAAGGTCACCA
AGGATGCCCCTGATTTCGCTAACGCTCTGAATGGGGTGCCGCCGATCAACAAGAACGAAGTCAACGCCAAAGTTCTTGTT
ACCGATGGAGAAACAATCGTCATCGGTGGTGTATTCTCCAACAGCCAGATCAGCAGCATTGAAAAAGTGCCGTTCCTGGG
TGACGTTCCGTTCGTTGGTCGCCTCTTCCGACGGGACATCGTGGAAGATAAAAAATCCGAGCTTCTGGTCTTCTTGACCC
CTAGAATCCTCAACTACCGAGCGGTCGCCGTGGGCCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(375-441)

AMIN domain (AMIN)

(38-123)

Bacterial type II and III secretion system protein (Secretin)

(541-697)

Secretin and TonB N terminus short domain (STN)

(302-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

74.131

100

0.755
  comQ Acinetobacter baylyi ADP1

41.81

98.584

0.412
  pilQ Acinetobacter baumannii D1279779

40.252

100

0.407
  pilQ Acinetobacter baumannii strain A118

40.252

100

0.407
  pilQ Legionella pneumophila strain ERS1305867

37.5

96.317

0.361