Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IGX38_RS02905 Genome accession   NZ_CP062162
Coordinates   635611..636675 (+) Length   354 a.a.
NCBI ID   WP_045159370.1    Uniprot ID   A0AA42PD57
Organism   Stutzerimonas stutzeri strain 2020WEIHUA_G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 630611..641675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGX38_RS02895 (IGX38_02885) - 631675..632878 (-) 1204 Protein_575 ISL3 family transposase -
  IGX38_RS02900 (IGX38_02890) - 633008..635431 (-) 2424 WP_041755269.1 penicillin-binding protein 1A -
  IGX38_RS02905 (IGX38_02895) comM 635611..636675 (+) 1065 WP_045159370.1 pilus assembly protein PilM Machinery gene
  IGX38_RS02910 (IGX38_02900) pilN 636675..637247 (+) 573 WP_053527824.1 type 4a pilus biogenesis protein PilN -
  IGX38_RS02915 (IGX38_02905) pilO 637244..637870 (+) 627 WP_242100545.1 type 4a pilus biogenesis protein PilO -
  IGX38_RS02920 (IGX38_02910) pilP 637867..638394 (+) 528 WP_045159373.1 type 4a pilus biogenesis lipoprotein PilP -
  IGX38_RS02925 (IGX38_02915) pilQ 638448..640568 (+) 2121 WP_242100547.1 type IV pilus secretin PilQ Machinery gene
  IGX38_RS02930 (IGX38_02920) aroK 640572..641117 (+) 546 WP_017244294.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37730.25 Da        Isoelectric Point: 4.6880

>NTDB_id=486606 IGX38_RS02905 WP_045159370.1 635611..636675(+) (comM) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
MLGLFTKKANTLLGIDISSTSVKLLELSRSGNRYRVEAYAVEPLPPNAVVEKNIAELEGVGQALQRVVAKAKTGCKSAVV
AVSGSAVITKMIEMDAGLSDEELENQLKIEADQYIPYPLEEVAIDFEVQGPAPRAPGRVEVLLAACRKENVEIREAALAL
AGLTAKVVDVEAYALERSYGLLASQLGTGHGELTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSQ
EEAGLAKKQGGLPDDYDSEVLLPFKEAVVQQVSRSLQFFFAAGQFHDVDCILLAGGTASIPGLDHMIQQKIGTQTLVANP
FADMALSGKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=486606 IGX38_RS02905 WP_045159370.1 635611..636675(+) (comM) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
GTGCTAGGGCTCTTCACTAAGAAAGCGAACACGCTGCTTGGGATCGATATCAGTTCGACCTCAGTCAAGCTCCTCGAATT
AAGTCGATCGGGTAATCGGTACCGCGTCGAGGCTTATGCCGTCGAGCCGCTACCGCCGAATGCCGTCGTCGAAAAGAACA
TCGCCGAACTTGAGGGTGTCGGTCAGGCCCTGCAGCGAGTCGTTGCCAAGGCCAAGACCGGCTGCAAGTCCGCTGTTGTC
GCTGTCTCCGGGTCTGCCGTCATCACAAAGATGATTGAGATGGATGCCGGGCTTTCTGATGAAGAGCTCGAGAACCAGCT
CAAGATCGAGGCGGATCAGTACATCCCCTACCCACTGGAGGAAGTCGCGATCGACTTCGAGGTGCAAGGTCCTGCGCCTC
GCGCGCCTGGCAGGGTAGAAGTTCTCCTCGCCGCTTGCCGTAAAGAGAATGTCGAGATCCGTGAAGCCGCGCTGGCCTTG
GCCGGACTTACCGCCAAAGTGGTGGATGTCGAGGCCTATGCGCTTGAGCGCTCCTATGGGTTGCTCGCTTCACAGTTGGG
TACAGGGCACGGCGAGCTGACCGTTGCCGTCGTCGACATCGGCGCGACCATGACAACCCTGAGCGTGCTGCATAACGGGC
GCACCATCTACACGCGCGAGCAGCTGTTCGGTGGTCGCCAACTGACCGAAGAGATCCAGCGCCGCTACGGTCTGTCTCAG
GAAGAAGCCGGCCTTGCCAAGAAGCAAGGCGGTCTCCCAGATGACTACGACAGTGAAGTCCTGCTTCCGTTCAAGGAGGC
GGTGGTGCAGCAGGTATCCCGCTCGTTGCAGTTCTTCTTCGCTGCAGGGCAGTTCCACGACGTCGACTGCATCCTGCTCG
CGGGCGGGACGGCCTCCATTCCGGGTCTCGATCACATGATCCAGCAAAAGATCGGAACGCAAACTCTAGTGGCTAATCCC
TTCGCCGATATGGCTTTGAGCGGCAAGGTGAACGCCGGGGCGCTGGCTAGTGATGCGCCTGCATTAATGATTGCATGCGG
TTTGGCGCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.932

100

0.559
  pilM Acinetobacter baumannii D1279779

55.932

100

0.559
  comM Acinetobacter baylyi ADP1

53.39

100

0.534
  pilM Legionella pneumophila strain ERS1305867

46.328

100

0.463