Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   IC780_RS17385 Genome accession   NZ_CP061629
Coordinates   3628987..3629871 (-) Length   294 a.a.
NCBI ID   WP_004705430.1    Uniprot ID   N8R1G5
Organism   Acinetobacter seifertii strain AS47     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3623987..3634871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC780_RS17370 (IC780_17365) miaB 3625566..3627017 (+) 1452 WP_019456556.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  IC780_RS17375 (IC780_17370) - 3627055..3628143 (+) 1089 WP_190977797.1 PhoH family protein -
  IC780_RS17380 (IC780_17375) ybeY 3628420..3628899 (+) 480 WP_004705432.1 rRNA maturation RNase YbeY -
  IC780_RS17385 (IC780_17380) tonB2 3628987..3629871 (-) 885 WP_004705430.1 energy transducer TonB Machinery gene
  IC780_RS17390 (IC780_17385) - 3630104..3630775 (+) 672 WP_004705429.1 hypothetical protein -
  IC780_RS17395 (IC780_17390) - 3630933..3631646 (+) 714 WP_151749370.1 DUF3108 domain-containing protein -
  IC780_RS17400 (IC780_17395) - 3631718..3632293 (+) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  IC780_RS17405 (IC780_17400) wrbA 3632347..3632940 (-) 594 WP_174740740.1 NAD(P)H:quinone oxidoreductase -
  IC780_RS17410 (IC780_17405) - 3633228..3634475 (+) 1248 WP_004705421.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33577.40 Da        Isoelectric Point: 8.3836

>NTDB_id=483700 IC780_RS17385 WP_004705430.1 3628987..3629871(-) (tonB2) [Acinetobacter seifertii strain AS47]
MLKKRSLPIEPFLYWWQDRVFIVAIILAILLHTLVLLIHFAMPAPSEQSTKEIAISIRPAEDAVKHADFLAQADQQGSGT
FREAHRMSSNSPTPMTTDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLESQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHSVLDEAAKASVRRGAPFGRFDSNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=483700 IC780_RS17385 WP_004705430.1 3628987..3629871(-) (tonB2) [Acinetobacter seifertii strain AS47]
ATGTTGAAAAAAAGAAGTCTTCCTATAGAGCCTTTTCTTTATTGGTGGCAAGACCGAGTCTTTATTGTTGCAATAATACT
CGCAATCTTGTTGCATACTCTTGTGCTGCTTATTCATTTTGCTATGCCTGCGCCGTCAGAGCAATCCACGAAAGAAATCG
CTATATCTATTCGTCCTGCTGAGGATGCTGTTAAGCATGCAGATTTTTTAGCGCAAGCAGACCAACAAGGTTCAGGAACT
TTTAGAGAGGCTCATCGGATGTCTAGTAATTCTCCGACGCCTATGACAACTGATGCTTCGACGGGAGAAGCCCAGTTAGA
AACTTTAGAAAAAGTACAGCAACAAAGAGAACTTAAGTTTGAAGAAAAAGTACTCATGACTGTGTTGAGTTGGCAGAAAC
AAGCTGAGGAGAGTCAAAGAAAGAAAGCACTTGAACAATTAGAAAGCCAGTTTCAAGCTAAAGCTGCAATGGTCGCGAGC
CTAGAAGCTCAATATTTACAACGTCAGCAAGATTTCAGTCGTCAACAAAAAATAAAAACAGTCGATGGTATTCAAGCCAA
GAAAGATGCTTCAGCAGCTTATTTAGATAAGTTCCGTGAAAAGGTGGAGCTTTACGGTAACCGTTATTATCCAGAAGAAG
CTAAACAACAACAATTAAAAGGTGAAGTTCGCCTTATGGTGATTTTGAATGCTCAAGGGGGCATTCGTGCAATTCGTTTA
CTTGAAAGTTCAGGACATTCAGTTTTAGATGAAGCTGCAAAAGCTTCTGTACGCCGTGGTGCGCCATTTGGTCGTTTTGA
TAGCAATATGAAAGATATTTCTGAGCTACGTATTATTCGTACTTGGCGTTTTGATCCAGCTGAAGCTGAATTTGAGGTAC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8R1G5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

94.898

100

0.949