Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IC793_RS01855 Genome accession   NZ_CP061571
Coordinates   376992..379103 (+) Length   703 a.a.
NCBI ID   WP_151682780.1    Uniprot ID   A0A7H2PS77
Organism   Acinetobacter seifertii strain AS70     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 371992..384103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC793_RS01835 (IC793_01835) pilM 373953..375011 (+) 1059 WP_191036737.1 pilus assembly protein PilM Machinery gene
  IC793_RS01840 (IC793_01840) pilN 375011..375655 (+) 645 WP_151682783.1 PilN domain-containing protein Machinery gene
  IC793_RS01845 (IC793_01845) pilO 375652..376392 (+) 741 WP_151682782.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC793_RS01850 (IC793_01850) pilP 376403..376930 (+) 528 WP_151682781.1 pilus assembly protein PilP Machinery gene
  IC793_RS01855 (IC793_01855) pilQ 376992..379103 (+) 2112 WP_151682780.1 type IV pilus secretin PilQ family protein Machinery gene
  IC793_RS01860 (IC793_01860) aroK 379115..379684 (+) 570 WP_151682779.1 shikimate kinase AroK -
  IC793_RS01865 (IC793_01865) aroB 379713..380795 (+) 1083 WP_151682778.1 3-dehydroquinate synthase -
  IC793_RS01870 (IC793_01870) - 380811..381685 (+) 875 Protein_362 hypothetical protein -

Sequence

Protein


Download         Length: 703 a.a.        Molecular weight: 76305.85 Da        Isoelectric Point: 6.7714

>NTDB_id=483273 IC793_RS01855 WP_151682780.1 376992..379103(+) (pilQ) [Acinetobacter seifertii strain AS70]
MNQVFRQFSMGVVAIAIMQAASAQVSMTNIVPTQIAGQGTELRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKQPKI
AVATNEASSVDVTSDEQRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTTKKPIPVAATQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTAVDVQQQGSKVVIRTLGTKIPTHLTRRLNVNDFATPVSIIDAYNDKDAGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKSVSSSYKTPSYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDQAKALAQTIKLAPIQTDYIRLSYAKAVDVLKLIEDTRDTKGSATNHTATSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITKNNDLLVG
GSEKTLWDLRTPDSSGKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTADKQTA
KVATGQQVPYLMTTTSGAGTTATTSFKDALLSLDVTPNITPDGKIQMKLDISKDSIAGEAPNGELILNKNNINTNVLVDN
GETVILGGVFEQTTKNSQTKVPFFGDIPLVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2112 bp        

>NTDB_id=483273 IC793_RS01855 WP_151682780.1 376992..379103(+) (pilQ) [Acinetobacter seifertii strain AS70]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGTTGTAGCGATTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAACGCAAATTGCAGGTCAGGGTACAGAACTTAGAGTCATGTTTAATGGTTTGCCTCCACAGCCAC
AAGCTTACCAACTTGAAAACCCTTCGCGTTTAATACTAGATTTTGATAAGGCACAACAAAGTTTAAAGCAGCCTAAAATA
GCTGTTGCAACTAATGAAGCAAGTTCAGTTGATGTGACTTCAGATGAACAGCGTTCTCGTTTAACCGTAAATCTAAAAGA
TGCAGGTGCTTTTACAACACGTGTGGAAGGTAATACTTTCATTCTAAAAATTAACTCAGCTCAAACAACTAAGAAGCCGA
TACCAGTAGCTGCTACACAACCACAAGGTGTTTCAAATATTGGTTTTCAACGTGGTAGTCAGGGAGAGGGTTTAGTTGTT
GTAGATCTTCTGGGAAGTAATACAGCTGTAGATGTTCAACAACAAGGTAGTAAAGTTGTTATAAGAACATTAGGCACAAA
AATTCCGACACATTTAACGCGCCGCTTAAATGTAAATGATTTTGCAACGCCAGTTTCAATTATCGATGCTTATAATGATA
AAGATGCTGGTGTAATTACGATTCAGTCATCTGGTAGCTATGAATATATGGCGTATCAGGCTGAAAATAAGCTGACCATT
AGTCTGAAACGTCCTCAAGATAAAAGTGTATCGTCTTCATATAAGACACCAAGTTATTCTGGCAATAAGCTTTCATTAGA
CTTCCAAGACATTGAAGTGCGTCGTGTTCTACAGTTGCTTGCTGATTTTACAGGAATCAACATGGTGGCAGCAGATAGCG
TGCAAGGTAATATCACACTACGTTTAAAAGATGTACCTTGGGATCAAGCCCTTGATATTATTTTAAAGACAAAAAATCTT
GATAAACGCCGTAATGGGAATGTGATCTGGATTGCGCCAGTTGCTGAGTTAATTAAAGCTGAAGATGATCAGGCAAAAGC
CTTAGCTCAAACGATTAAGTTGGCTCCAATCCAAACTGATTATATCCGCTTGAGTTATGCGAAAGCAGTTGATGTGCTTA
AGTTGATTGAAGATACTCGTGATACAAAAGGATCTGCTACGAATCATACTGCCACTTCAGATTCTCTGGCTTTAGAGAGT
TTATTGAGCTCACGTGGTAGCGCGGTTGCGGATACCCGAACTAATACCTTGATTGTAAATGATACAGCACAGAATATTGA
TAAAGTTCGTAAAATGATTGACTTGCTTGATGTACAAGTGAAACAAGTCATGGTTGAAGCACGTATTGTAAGAGCCTCTA
CCTCATTTACAAAAGAACTTGGGGTGAAATGGGGTATTCTTTCACAAGGAATTACTAAGAATAATGATTTATTGGTTGGG
GGGAGTGAAAAGACTTTATGGGATCTAAGAACTCCTGATAGTAGTGGAAAATACACAATTGAACGACCAGATAACCTAAA
CGTCGATTTAGGAGTTTCTAATCCAGCGGGAAGTATTGCTTTTGGTCTTATCAGTATGTCTGACTTTATGTTAGATTTAG
AGTTATCTGCTTTACAGGCTGATGGCTATGGTGAAGTGATTTCAACGCCTAAAGTGATGACGGCCGATAAGCAAACTGCA
AAAGTTGCAACAGGTCAACAAGTTCCTTATCTAATGACAACGACCTCTGGTGCTGGTACTACTGCAACAACATCATTCAA
AGATGCGCTCTTGAGTCTAGATGTTACTCCGAACATTACACCTGATGGCAAGATACAAATGAAGTTAGATATTTCTAAAG
ATTCTATAGCTGGTGAAGCACCAAATGGTGAATTAATTCTGAATAAGAATAATATCAATACCAATGTATTGGTGGACAAT
GGAGAAACTGTCATTTTGGGTGGTGTATTCGAGCAAACAACAAAGAATTCTCAAACTAAAGTTCCTTTCTTTGGGGATAT
TCCTTTGGTTGGGCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAAGAGTTACTGATTTTCGTAACACCACGAA
TTGTTAATGACACTTTGGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

AMIN domain (AMIN)

(39-121)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(537-695)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2PS77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

85.853

100

0.881
  pilQ Acinetobacter baumannii strain A118

85.714

100

0.879
  comQ Acinetobacter baylyi ADP1

73.625

100

0.743
  pilQ Pseudomonas aeruginosa PAK

38.472

100

0.408