Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IC793_RS01840 Genome accession   NZ_CP061571
Coordinates   375011..375655 (+) Length   214 a.a.
NCBI ID   WP_151682783.1    Uniprot ID   A0A7H2PS74
Organism   Acinetobacter seifertii strain AS70     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 370011..380655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC793_RS01820 (IC793_01820) - 370059..370391 (+) 333 WP_004705180.1 hypothetical protein -
  IC793_RS01825 (IC793_01825) - 370394..371218 (+) 825 WP_151682784.1 putative RNA methyltransferase -
  IC793_RS01830 (IC793_01830) ponA 371236..373791 (-) 2556 WP_039251098.1 penicillin-binding protein PBP1a -
  IC793_RS01835 (IC793_01835) pilM 373953..375011 (+) 1059 WP_191036737.1 pilus assembly protein PilM Machinery gene
  IC793_RS01840 (IC793_01840) pilN 375011..375655 (+) 645 WP_151682783.1 PilN domain-containing protein Machinery gene
  IC793_RS01845 (IC793_01845) pilO 375652..376392 (+) 741 WP_151682782.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC793_RS01850 (IC793_01850) pilP 376403..376930 (+) 528 WP_151682781.1 pilus assembly protein PilP Machinery gene
  IC793_RS01855 (IC793_01855) pilQ 376992..379103 (+) 2112 WP_151682780.1 type IV pilus secretin PilQ family protein Machinery gene
  IC793_RS01860 (IC793_01860) aroK 379115..379684 (+) 570 WP_151682779.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24166.57 Da        Isoelectric Point: 5.3957

>NTDB_id=483270 IC793_RS01840 WP_151682783.1 375011..375655(+) (pilN) [Acinetobacter seifertii strain AS70]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLITSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQDLQSQRPVVVRLVDELVRVMPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEDKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTADNNADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=483270 IC793_RS01840 WP_151682783.1 375011..375655(+) (pilN) [Acinetobacter seifertii strain AS70]
ATGGCAACAATTAATTTACTACCTTGGCGTGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGCTTTGG
GGTGGTTGTGTTAGGAATTACAACCGTATTTGGGGGGTGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ATCAACTTATTACAAGTACTAATCAAAACCTTGATCAGCAATTAAAAGCATTAAATGGTTTACAAGAACAACGTGATGCC
ATCATTGAGCGTATGAAATTGATTCAAGATTTACAGAGTCAGCGTCCAGTCGTGGTAAGACTGGTTGATGAGTTAGTCAG
AGTCATGCCGCCTGCAATGTATTTAACGAAATTTAGCCGAACTGGGGATAAATTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACGGTAGCTGAACTACTGCGTAATCTTGAAGCATCTCCTTGGTATCGAAATGCTTTTATGAACTCTTTCTTGGCT
ACTGAAGATAAAAAAGATAAGGCAGCAAGTTCTCTTCTTCCTAGGGTAGAAGATCATTACGGTAGTTTTGTTGTGACTGT
CGATTTAGGGGAAATGGGCGTGACCACAGCTGATAATAATGCTGATAAACCAGCCGTAGCTAAAGATACGGGGGCAGCAA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2PS74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

92.056

100

0.921
  comN Acinetobacter baylyi ADP1

70.142

98.598

0.692