Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   NMBM01240355_RS04845 Genome accession   NC_017517
Coordinates   936709..937182 (+) Length   157 a.a.
NCBI ID   WP_014581932.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240355     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 931709..942182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS04820 (NMBM01240355_0883) dnaB 932170..933576 (+) 1407 WP_002213843.1 replicative DNA helicase -
  NMBM01240355_RS04825 (NMBM01240355_0884) pilH 933885..934562 (+) 678 WP_002213841.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NMBM01240355_RS04830 (NMBM01240355_0885) pilV 934586..935197 (+) 612 WP_041423359.1 type IV pilus modification protein PilV Machinery gene
  NMBM01240355_RS04835 (NMBM01240355_0886) pilJ 935194..936132 (+) 939 WP_041423360.1 PilW family protein Machinery gene
  NMBM01240355_RS04840 (NMBM01240355_0887) pilK 936111..936704 (+) 594 WP_014581931.1 pilus assembly protein Machinery gene
  NMBM01240355_RS04845 (NMBM01240355_0888) pilX 936709..937182 (+) 474 WP_014581932.1 PilX family type IV pilin Machinery gene
  NMBM01240355_RS04850 (NMBM01240355_0889) - 938446..938871 (-) 426 Protein_917 AzlC family ABC transporter permease -
  NMBM01240355_RS04855 (NMBM01240355_0890) dut 939013..939465 (+) 453 WP_014581934.1 dUTP diphosphatase -
  NMBM01240355_RS04860 (NMBM01240355_0891) dapC 939542..940729 (+) 1188 WP_014581935.1 succinyldiaminopimelate transaminase -
  NMBM01240355_RS04865 (NMBM01240355_0892) yaaA 940993..941772 (+) 780 WP_014581936.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17496.30 Da        Isoelectric Point: 9.7523

>NTDB_id=48107 NMBM01240355_RS04845 WP_014581932.1 936709..937182(+) (pilX) [Neisseria meningitidis M01-240355]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQNIKSKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASARAHLKTLSADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=48107 NMBM01240355_RS04845 WP_014581932.1 936709..937182(+) (pilX) [Neisseria meningitidis M01-240355]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGAACATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGCATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCCATTTGAAGACCTTGTCCGCAGATGCCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

96.815

100

0.968
  pilL Neisseria gonorrhoeae MS11

86.624

100

0.866

Multiple sequence alignment