Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   NMBM01240355_RS04835 Genome accession   NC_017517
Coordinates   935194..936132 (+) Length   312 a.a.
NCBI ID   WP_041423360.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240355     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 930194..941132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS04815 (NMBM01240355_0882) - 931420..932007 (-) 588 WP_014581927.1 superoxide dismutase -
  NMBM01240355_RS04820 (NMBM01240355_0883) dnaB 932170..933576 (+) 1407 WP_002213843.1 replicative DNA helicase -
  NMBM01240355_RS04825 (NMBM01240355_0884) pilH 933885..934562 (+) 678 WP_002213841.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NMBM01240355_RS04830 (NMBM01240355_0885) pilV 934586..935197 (+) 612 WP_041423359.1 type IV pilus modification protein PilV Machinery gene
  NMBM01240355_RS04835 (NMBM01240355_0886) pilJ 935194..936132 (+) 939 WP_041423360.1 PilW family protein Machinery gene
  NMBM01240355_RS04840 (NMBM01240355_0887) pilK 936111..936704 (+) 594 WP_014581931.1 pilus assembly protein Machinery gene
  NMBM01240355_RS04845 (NMBM01240355_0888) pilX 936709..937182 (+) 474 WP_014581932.1 PilX family type IV pilin Machinery gene
  NMBM01240355_RS04850 (NMBM01240355_0889) - 938446..938871 (-) 426 Protein_917 AzlC family ABC transporter permease -
  NMBM01240355_RS04855 (NMBM01240355_0890) dut 939013..939465 (+) 453 WP_014581934.1 dUTP diphosphatase -
  NMBM01240355_RS04860 (NMBM01240355_0891) dapC 939542..940729 (+) 1188 WP_014581935.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34349.93 Da        Isoelectric Point: 8.1075

>NTDB_id=48105 NMBM01240355_RS04835 WP_041423360.1 935194..936132(+) (pilJ) [Neisseria meningitidis M01-240355]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLSAQQDLRNAATLIVRDARMAGGFG
CFNMSEHPATDVISDTTQQNSPFSLKRNGIDKLIPITESLNINYQNFFQVDSALIFQYGIDDLDASAETVVVSSCSKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLDDKGKWGNPQLLAKKIRHMKVRYIYVS
DCPEDDDAGKEETFKYTDTFNSAKDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=48105 NMBM01240355_RS04835 WP_041423360.1 935194..936132(+) (pilJ) [Neisseria meningitidis M01-240355]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTTCCGCACAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCGAGAATGGCGGGCGGCTTCGGT
TGTTTCAATATGTCCGAGCATCCTGCAACTGATGTTATTTCCGATACGACGCAACAAAATTCTCCTTTTTCCTTAAAAAG
GAACGGTATAGATAAACTTATCCCCATAACGGAATCTTTAAATATCAATTATCAGAATTTTTTCCAGGTTGATAGCGCAT
TGATTTTTCAATACGGAATCGATGATCTTGATGCGAGTGCTGAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGG
ATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAGACATATGAAAGTGCGGTATATCTATGTTTCC
GACTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAAATATACGGATACATTCAACAGCGCCAAAGATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

79.43

100

0.804

Multiple sequence alignment