Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NMBM01240355_RS04840 Genome accession   NC_017517
Coordinates   936111..936704 (+) Length   197 a.a.
NCBI ID   WP_014581931.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240355     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 931111..941704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS04815 (NMBM01240355_0882) - 931420..932007 (-) 588 WP_014581927.1 superoxide dismutase -
  NMBM01240355_RS04820 (NMBM01240355_0883) dnaB 932170..933576 (+) 1407 WP_002213843.1 replicative DNA helicase -
  NMBM01240355_RS04825 (NMBM01240355_0884) pilH 933885..934562 (+) 678 WP_002213841.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NMBM01240355_RS04830 (NMBM01240355_0885) pilV 934586..935197 (+) 612 WP_041423359.1 type IV pilus modification protein PilV Machinery gene
  NMBM01240355_RS04835 (NMBM01240355_0886) pilJ 935194..936132 (+) 939 WP_041423360.1 PilW family protein Machinery gene
  NMBM01240355_RS04840 (NMBM01240355_0887) pilK 936111..936704 (+) 594 WP_014581931.1 pilus assembly protein Machinery gene
  NMBM01240355_RS04845 (NMBM01240355_0888) pilX 936709..937182 (+) 474 WP_014581932.1 PilX family type IV pilin Machinery gene
  NMBM01240355_RS04850 (NMBM01240355_0889) - 938446..938871 (-) 426 Protein_917 AzlC family ABC transporter permease -
  NMBM01240355_RS04855 (NMBM01240355_0890) dut 939013..939465 (+) 453 WP_014581934.1 dUTP diphosphatase -
  NMBM01240355_RS04860 (NMBM01240355_0891) dapC 939542..940729 (+) 1188 WP_014581935.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21660.46 Da        Isoelectric Point: 5.3764

>NTDB_id=48106 NMBM01240355_RS04840 WP_014581931.1 936111..936704(+) (pilK) [Neisseria meningitidis M01-240355]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCTANSTNLCIDNKGTEYKKGTQSVSKMPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=48106 NMBM01240355_RS04840 WP_014581931.1 936111..936704(+) (pilK) [Neisseria meningitidis M01-240355]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCACTGCAAATTCTACCA
ACCTGTGCATTGACAATAAAGGGACGGAATATAAGAAAGGCACGCAAAGCGTCAGCAAAATGCCACGTTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

87.129

100

0.893

Multiple sequence alignment