NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	J5D21_RS03770	Genome accession	NZ_CP071982
Coordinates	814591..816111 (-)	Length	506 a.a.
NCBI ID	WP_209611160.1	Uniprot ID	-
Organism	Helicobacter pylori strain MT5135
Function	interact with DprA (predicted from homology) Homologous recombination

Genomic Context

Location: 809591..821111

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D21_RS03755 (J5D21_03755)	-	810947..811108 (-)	162	WP_193741279.1	hypothetical protein	-
J5D21_RS03760 (J5D21_03760)	-	811205..812470 (-)	1266	WP_209611157.1	restriction endonuclease subunit S	-
J5D21_RS03765 (J5D21_03765)	-	812506..814566 (-)	2061	WP_209611158.1	heavy metal translocating P-type ATPase	-
J5D21_RS03770 (J5D21_03770)	comM	814591..816111 (-)	1521	WP_209611160.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
J5D21_RS03775 (J5D21_03775)	def	816117..816641 (-)	525	WP_001185863.1	peptide deformylase	-
J5D21_RS03780 (J5D21_03780)	clpP	816646..817233 (-)	588	WP_000540576.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	-
J5D21_RS03785 (J5D21_03785)	tig	817253..818608 (-)	1356	WP_209611162.1	trigger factor	-
J5D21_RS03790 (J5D21_03790)	-	818721..819557 (-)	837	WP_209611164.1	outer membrane protein	-
J5D21_RS03795 (J5D21_03795)	hpaA	819579..820361 (-)	783	WP_000855929.1	flagellar sheath lipoprotein HpaA	-
J5D21_RS03800 (J5D21_03800)	moaC	820480..820956 (-)	477	WP_001131535.1	cyclic pyranopterin monophosphate synthase MoaC	-

Sequence

Protein

Download Length: 506 a.a. Molecular weight: 57191.18 Da Isoelectric Point: 8.3894

                                >NTDB_id=480250 J5D21_RS03770 WP_209611160.1 814591..816111(-) (comM) [Helicobacter pylori strain MT5135]

MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF

DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKRPHAKIIAPKANEELFSLIPNLQCFFVEHFKE

ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR

MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD

ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSSTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE

GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNTEAQKLLEQAVERFNLSMRSVNKVKKVAR

TIADLNACENIEKSHMLKALSFRKIS

Nucleotide

Download Length: 1521 bp

                                >NTDB_id=480250 J5D21_RS03770 WP_209611160.1 814591..816111(-) (comM) [Helicobacter pylori strain MT5135]

ATGATCAACACGATATTTTGCGCGACCATGCAAAGGGGGGTGGCTGAAATCGTGGCCGTGGAAGCGACTTTCACAAGGGC

TTTGCCGGCGTTTGTGATTTCAGGCCTGGCTAATAGCTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA

ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCCTCAGATTTGCCTAAATCCGGGAGCCATTTT

GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG

GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCGCCCCCATGCCAAAA

TCATTGCGCCTAAAGCGAATGAAGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA

GCTTTAGAAATCTTACAAAATCCTGAAATCAAAGCAGACACCCACACGAAAAAATTACCCTTTAAAACGATAGAATTGAA

CGATAAAGAGTATTATTTTTCAGACGCCTATGCATTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG

CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC

ATGCGTTATATCTTGCCTCCATTGAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG

CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTCA

AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT

ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAGATTGAATACGAAAC

CTCTTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCTCAACCAAAGCATGCCGTTGCCAAG

ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTCGTGCAAATGGAAGAG

GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTGTTATTAGCTTTCAAACAGCA

AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAATACTGAAG

CGCAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTCAATAAGGTCAAAAAAGTCGCTAGG

ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA

A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Helicobacter pylori 26695	97.431	100	0.974
comM	Acinetobacter baylyi ADP1	36.399	100	0.368
comM	Legionella pneumophila str. Paris	36.581	99.407	0.364
comM	Legionella pneumophila strain ERS1305867	36.581	99.407	0.364

Detailed information NTG0480250