Detailed information NTG0480248

Bioinformatically predicted

Overview

• Name: uvrA
• Type: Machinery gene
• Locus tag: J5D21_RS03335
• Genome accession: NZ_CP071982
• Coordinates: 722654..725479 (-)
• Length: 941 a.a.
• NCBI ID: WP_209612382.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5135
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 717654..730479

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D21_RS03320 (J5D21_03320)	gyrA	717882..720368 (+)	2487	WP_209612377.1	DNA topoisomerase (ATP-hydrolyzing) subunit A	-
J5D21_RS03325 (J5D21_03325)	-	720368..720841 (+)	474	WP_209612379.1	hypothetical protein	-
J5D21_RS03330 (J5D21_03330)	flgR	720838..721983 (+)	1146	WP_209612380.1	sigma-54-dependent transcriptional regulator	-
J5D21_RS03335 (J5D21_03335)	uvrA	722654..725479 (-)	2826	WP_209612382.1	excinuclease ABC subunit UvrA	Machinery gene
J5D21_RS03340 (J5D21_03340)	hopE	725644..726465 (+)	822	WP_000395382.1	Hop family outer membrane protein HopE	-
J5D21_RS03345 (J5D21_03345)	rsmH	726638..727564 (+)	927	WP_209612384.1	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	-
J5D21_RS03350 (J5D21_03350)	-	727585..727929 (+)	345	WP_001022688.1	hypothetical protein	-
J5D21_RS07885	-	728057..728253 (+)	197	Protein_668	hypothetical protein	-
J5D21_RS03355 (J5D21_03355)	-	728392..729294 (+)	903	WP_209612386.1	SAM hydrolase/SAM-dependent halogenase family protein	-

Sequence

Protein

• Length: 941 a.a.
• Molecular weight: 104621.46 Da
• Isoelectric Point: 7.9523

>NTDB_id=480248 J5D21_RS03335 WP_209612382.1 722654..725479(-) (uvrA) [Helicobacter pylori strain MT5135]
MQHKTIMDKIIIQGARENNLKNIFLEIPKNQFIVFTGLSGSGKSTLAFDTLYAEGQRRYLESLSSYARQFLDKVGKPNVD
KIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLFARVGEQFCPTCLEPISSMSASDIISQICHLEENSKTIILAPI
IKDKKGSFNDKLESLRLKGYVRAFVDGVMVRLDEEIHLHKTKKHTIEAVVDRVVINSENASRIASAIEKALKESYGELEV
EILQDNAPSIRKHYSEHKACFKCKMSFEELEPLSFSFNSPKGACESCLGLGTKFSLDISKILDPNTPLNQGAIKVIFGYN
RSYYAQMFEGFCAYNGIDSALCFNELNKEQQDALLYGNGTEISFHFKNSPLKRPWKGIIQIAYDMFKEQKDLSDYMSEKT
CSSCKGHRLKASSLSVQVAGLKMADFLTKPIEEVYHFFNDPTHFSYLNEQEKKIAEPILKEILERVFFLYDVGLGYLTLG
RDARTISGGESQRIRIASQIGSGLTGVLYVLDEPSIGLHEKDTLKLINTLRNLQKKGNTLIVVEHDKETIKHADFVVDIG
PKAGKHGGEVVFSGSVKDLLQNNHSTALYLNGTKKIERPKFEPPKEKHFLEIKNVNINNIKNLSVQIPLKQLVCITGVSG
SGKSSLILQTLLPTAQTLLNHAKKAQSLNGVEIVGLEHLDKVIYLDQAPIGKTPRSNPATYTGVMDEIRILFAEQKEAKI
LGYSASRFSFNVKGGRCEKCQGDGDIKIEMHFLPDVLVQCDSCKGAKYNPQTLEIKVKGKSIADVLNMSVEEAYEFFAKF
PKIAVKLKTLIDVGLGYITLGQNATTLSGGEAQRIKLAKELSKKDTGKTLYILDEPTTGLHFEDVNHLLQVLHSLVALGN
SMLVIEHNLDIIKNADYIIDMGPDGGDKGGRVIASGTPLEVAQNCEKTQSYTGKFLALELK

Nucleotide

• Length: 2826 bp

>NTDB_id=480248 J5D21_RS03335 WP_209612382.1 722654..725479(-) (uvrA) [Helicobacter pylori strain MT5135]
TTGCAACATAAAACTATTATGGATAAGATCATTATTCAAGGGGCTAGGGAAAACAATCTCAAAAATATTTTTTTAGAAAT
CCCTAAAAACCAATTTATTGTTTTTACCGGATTGAGCGGTTCGGGTAAATCCACTCTGGCGTTTGACACTCTATACGCTG
AAGGCCAAAGGCGCTATTTAGAGAGTTTGTCAAGCTATGCGAGGCAATTTTTAGACAAAGTGGGTAAGCCTAATGTGGAT
AAGATTGAAGGGCTAACCCCAGCGATCGCTATTGATCAAAAGACCACTTCTAAAAACCCTAGATCCACTGTGGGGACGAT
CACTGAGATTTATGATTATTTAAGGTTGCTGTTTGCAAGGGTTGGGGAGCAATTTTGCCCCACATGTTTAGAGCCTATTA
GTTCTATGAGCGCGAGCGATATTATTTCTCAAATCTGTCATTTAGAAGAAAATTCTAAAACCATTATTCTAGCCCCCATT
ATTAAAGATAAAAAAGGTTCGTTTAACGATAAATTAGAGAGCTTGCGTTTGAAGGGGTATGTGAGGGCTTTTGTTGATGG
GGTGATGGTGCGTTTAGATGAGGAAATCCATTTGCATAAAACCAAAAAACACACCATTGAAGCGGTGGTGGATAGGGTGG
TTATCAATAGCGAAAATGCTTCACGGATCGCTAGCGCAATAGAAAAAGCCCTTAAAGAAAGCTATGGGGAATTAGAAGTG
GAAATCTTGCAAGACAACGCGCCAAGCATAAGAAAGCATTACAGCGAGCATAAGGCATGTTTTAAGTGTAAGATGAGTTT
TGAAGAATTAGAGCCTTTGAGTTTTTCCTTCAATTCGCCTAAAGGGGCGTGCGAAAGTTGTTTGGGTTTGGGGACAAAAT
TTAGCTTAGATATTAGTAAGATTTTAGATCCTAACACGCCTTTAAATCAAGGGGCGATCAAAGTGATTTTTGGGTATAAC
CGCAGTTATTACGCTCAAATGTTTGAAGGCTTTTGCGCTTATAATGGCATTGACAGCGCGCTTTGTTTTAACGAATTGAA
TAAAGAGCAACAAGACGCTCTTTTGTATGGGAATGGCACTGAAATCAGCTTTCATTTTAAAAATAGCCCCTTGAAACGCC
CCTGGAAAGGCATTATCCAAATCGCTTATGACATGTTTAAAGAGCAAAAGGATTTGAGCGATTACATGAGCGAAAAAACC
TGTTCTTCGTGCAAGGGGCATCGTTTGAAAGCCTCAAGTTTGAGCGTTCAAGTCGCTGGCTTGAAAATGGCGGATTTTTT
AACTAAGCCCATTGAAGAAGTCTATCATTTTTTTAATGATCCCACGCATTTTAGCTATCTTAACGAGCAAGAAAAAAAGA
TTGCTGAACCCATTTTAAAAGAGATTTTAGAAAGGGTGTTTTTTTTATACGATGTGGGGCTAGGGTATTTGACTTTAGGG
AGGGATGCGCGAACGATTAGCGGAGGGGAGAGCCAAAGGATACGAATCGCCAGTCAAATCGGGAGTGGTTTGACAGGGGT
TTTGTATGTTTTAGACGAGCCTAGCATTGGCTTGCATGAAAAGGACACGCTCAAACTCATCAACACCCTTAGGAATTTAC
AAAAAAAGGGGAACACGCTCATTGTCGTAGAGCATGATAAAGAGACGATTAAGCATGCGGATTTTGTTGTGGATATTGGG
CCAAAGGCTGGAAAGCATGGGGGTGAAGTGGTTTTTAGCGGGAGCGTGAAAGATTTATTGCAAAATAACCATTCTACCGC
CTTGTATCTCAACGGCACTAAAAAGATTGAGCGCCCTAAATTTGAACCCCCTAAAGAAAAGCATTTTTTAGAAATTAAAA
ATGTCAATATCAATAACATTAAGAATTTGAGCGTTCAAATCCCTTTAAAACAATTGGTGTGCATTACGGGGGTGAGCGGG
AGCGGTAAAAGCTCGCTGATCTTACAAACCCTTTTACCCACCGCTCAAACCCTTTTAAACCATGCTAAAAAAGCTCAAAG
CTTGAATGGGGTGGAGATTGTAGGGTTGGAGCATTTGGATAAAGTGATTTATTTAGATCAAGCCCCCATAGGCAAAACCC
CACGGAGCAACCCTGCCACTTACACAGGGGTGATGGATGAAATCAGGATTTTATTTGCCGAACAGAAAGAAGCTAAAATT
TTAGGCTATAGCGCGAGCCGTTTTAGCTTTAATGTTAAAGGGGGGCGGTGCGAGAAATGCCAAGGCGATGGGGATATTAA
AATAGAAATGCACTTTTTGCCTGATGTGTTGGTCCAATGCGATAGCTGTAAGGGCGCTAAATACAACCCCCAGACTTTAG
AAATCAAGGTGAAAGGCAAATCCATTGCTGATGTGTTGAACATGAGCGTGGAAGAGGCTTATGAATTTTTTGCTAAATTC
CCTAAAATCGCCGTGAAGTTAAAAACGCTTATAGATGTGGGCTTGGGCTATATCACTTTAGGGCAAAACGCTACGACTTT
AAGCGGGGGGGAGGCTCAAAGGATCAAATTGGCTAAAGAATTGAGTAAAAAAGACACAGGTAAAACCCTTTATATTTTAG
ATGAGCCTACCACCGGTTTGCATTTTGAAGACGTGAATCACCTTTTACAGGTTTTGCATTCTTTAGTGGCGTTAGGCAAT
TCCATGCTAGTGATTGAGCATAATTTAGACATTATCAAAAACGCTGATTACATTATAGACATGGGGCCTGATGGGGGGGA
TAAGGGCGGGAGAGTCATTGCGAGCGGCACGCCTTTAGAAGTGGCACAAAATTGCGAAAAAACCCAAAGCTACACGGGAA
AATTTTTAGCTTTGGAATTGAAATAG

Domains

Predicted by InterProScan.

• UvrA interaction domain (UvrA_inter) (137-243)

• UvrA DNA-binding domain (UvrA_DNA-bind) (297-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrA	Streptococcus pneumoniae R6	50.052	100	0.509
uvrA	Streptococcus pneumoniae TIGR4	50.052	100	0.509
uvrA	Streptococcus pneumoniae D39	50.052	100	0.509