Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   IAR39_RS00450 Genome accession   NZ_CP061041
Coordinates   91625..91942 (-) Length   105 a.a.
NCBI ID   WP_002465742.1    Uniprot ID   -
Organism   Staphylococcus warneri strain WS479     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 86625..96942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAR39_RS00430 (IAR39_00430) gcvPA 87204..88553 (-) 1350 WP_187835275.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  IAR39_RS00435 (IAR39_00435) gcvT 88572..89663 (-) 1092 WP_058710166.1 glycine cleavage system aminomethyltransferase GcvT -
  IAR39_RS00440 (IAR39_00440) - 89835..90353 (-) 519 WP_071561236.1 shikimate kinase -
  IAR39_RS00445 (IAR39_00445) - 90512..91009 (-) 498 WP_145541288.1 competence type IV pilus minor pilin ComGF -
  IAR39_RS12675 comGD 91207..91647 (-) 441 WP_071561239.1 competence type IV pilus minor pilin ComGD Machinery gene
  IAR39_RS00450 (IAR39_00450) comGC 91625..91942 (-) 318 WP_002465742.1 competence type IV pilus major pilin ComGC Machinery gene
  IAR39_RS00455 (IAR39_00455) comGB 91955..93022 (-) 1068 WP_107529356.1 competence type IV pilus assembly protein ComGB -
  IAR39_RS00460 (IAR39_00460) comGA 92994..93968 (-) 975 WP_002465784.1 competence type IV pilus ATPase ComGA Machinery gene
  IAR39_RS00465 (IAR39_00465) - 94015..94638 (-) 624 WP_002465751.1 MBL fold metallo-hydrolase -
  IAR39_RS00470 (IAR39_00470) - 94642..94965 (-) 324 WP_015364969.1 MTH1187 family thiamine-binding protein -
  IAR39_RS00475 (IAR39_00475) - 94965..95951 (-) 987 WP_002465775.1 ROK family glucokinase -
  IAR39_RS00480 (IAR39_00480) - 95948..96151 (-) 204 WP_002451885.1 YqgQ family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11738.79 Da        Isoelectric Point: 9.5430

>NTDB_id=479989 IAR39_RS00450 WP_002465742.1 91625..91942(-) (comGC) [Staphylococcus warneri strain WS479]
MRKHKYSLKTKAFTLIEMLLVLLIISLLLILIIPNVAKQTAHIQSTGCDAQVKMINSQIEAYTLKHNRNPNTIQDLITEG
YIKENQKSCKTGETISISNGEAIAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=479989 IAR39_RS00450 WP_002465742.1 91625..91942(-) (comGC) [Staphylococcus warneri strain WS479]
ATGAGAAAACATAAATACTCACTTAAAACTAAAGCTTTCACCTTAATAGAAATGCTTTTAGTATTATTAATCATAAGTTT
ATTACTTATTTTAATTATACCTAATGTCGCCAAACAGACGGCACATATTCAATCAACTGGATGCGATGCACAAGTTAAAA
TGATAAATAGCCAAATTGAAGCGTATACTTTAAAACATAATAGAAATCCAAATACTATTCAGGATTTAATTACAGAAGGA
TATATTAAAGAGAATCAAAAAAGTTGTAAAACAGGTGAAACAATTTCAATAAGTAATGGCGAAGCGATTGCAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

81.188

96.19

0.781
  comGC Staphylococcus aureus N315

81.188

96.19

0.781
  comYC Streptococcus gordonii str. Challis substr. CH1

43.434

94.286

0.41
  comYC Streptococcus suis isolate S10

50

76.19

0.381
  comGC Bacillus subtilis subsp. subtilis str. 168

42.553

89.524

0.381