Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   IAR39_RS12675 Genome accession   NZ_CP061041
Coordinates   91207..91647 (-) Length   146 a.a.
NCBI ID   WP_071561239.1    Uniprot ID   -
Organism   Staphylococcus warneri strain WS479     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 86207..96647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAR39_RS00430 (IAR39_00430) gcvPA 87204..88553 (-) 1350 WP_187835275.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  IAR39_RS00435 (IAR39_00435) gcvT 88572..89663 (-) 1092 WP_058710166.1 glycine cleavage system aminomethyltransferase GcvT -
  IAR39_RS00440 (IAR39_00440) - 89835..90353 (-) 519 WP_071561236.1 shikimate kinase -
  IAR39_RS00445 (IAR39_00445) - 90512..91009 (-) 498 WP_145541288.1 competence type IV pilus minor pilin ComGF -
  IAR39_RS12675 comGD 91207..91647 (-) 441 WP_071561239.1 competence type IV pilus minor pilin ComGD Machinery gene
  IAR39_RS00450 (IAR39_00450) comGC 91625..91942 (-) 318 WP_002465742.1 competence type IV pilus major pilin ComGC Machinery gene
  IAR39_RS00455 (IAR39_00455) comGB 91955..93022 (-) 1068 WP_107529356.1 competence type IV pilus assembly protein ComGB -
  IAR39_RS00460 (IAR39_00460) comGA 92994..93968 (-) 975 WP_002465784.1 competence type IV pilus ATPase ComGA Machinery gene
  IAR39_RS00465 (IAR39_00465) - 94015..94638 (-) 624 WP_002465751.1 MBL fold metallo-hydrolase -
  IAR39_RS00470 (IAR39_00470) - 94642..94965 (-) 324 WP_015364969.1 MTH1187 family thiamine-binding protein -
  IAR39_RS00475 (IAR39_00475) - 94965..95951 (-) 987 WP_002465775.1 ROK family glucokinase -
  IAR39_RS00480 (IAR39_00480) - 95948..96151 (-) 204 WP_002451885.1 YqgQ family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17001.31 Da        Isoelectric Point: 10.6205

>NTDB_id=480022 IAR39_RS12675 WP_071561239.1 91207..91647(-) (comGD) [Staphylococcus warneri strain WS479]
MAKRLQIKAYNYIEMLMVLFILSILLLCTLSSKNLLTISKSNDEMNINLLITQLNYIKSKAISEKQSITLMFNHQSSHIN
VKEENGKKYQIKIKDGKIIKITKINLITFDKNGNVNHFGSLNIKMKHSIYKVIFHIEKGRIRYTKL

Nucleotide


Download         Length: 441 bp        

>NTDB_id=480022 IAR39_RS12675 WP_071561239.1 91207..91647(-) (comGD) [Staphylococcus warneri strain WS479]
ATGGCGAAGCGATTGCAAATTAAAGCGTATAATTACATAGAAATGTTAATGGTATTATTCATTTTGTCTATACTATTGTT
GTGTACTTTAAGCAGTAAAAATCTTTTAACAATATCAAAATCTAATGATGAAATGAATATTAATCTACTAATAACTCAAT
TGAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTTTAATGTTTAATCATCAATCTTCTCATATAAAT
GTTAAAGAAGAAAATGGTAAAAAGTATCAAATAAAAATAAAAGATGGGAAGATCATAAAGATAACGAAAATAAATCTAAT
TACCTTTGATAAAAACGGCAATGTTAATCATTTTGGTTCGTTAAATATAAAAATGAAACATTCAATATACAAAGTCATAT
TTCATATTGAGAAAGGACGAATAAGGTATACCAAACTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

49.664

100

0.507
  comGD Staphylococcus aureus N315

49.664

100

0.507