Detailed information NTG0479990

Bioinformatically predicted

Overview

• Name: comGA
• Type: Machinery gene
• Locus tag: IAR39_RS00460
• Genome accession: NZ_CP061041
• Coordinates: 92994..93968 (-)
• Length: 324 a.a.
• NCBI ID: WP_002465784.1
• Uniprot ID: -
• Organism: Staphylococcus warneri strain WS479
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 87994..98968

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IAR39_RS00435 (IAR39_00435)	gcvT	88572..89663 (-)	1092	WP_058710166.1	glycine cleavage system aminomethyltransferase GcvT	-
IAR39_RS00440 (IAR39_00440)	-	89835..90353 (-)	519	WP_071561236.1	shikimate kinase	-
IAR39_RS00445 (IAR39_00445)	-	90512..91009 (-)	498	WP_145541288.1	competence type IV pilus minor pilin ComGF	-
IAR39_RS12675	comGD	91207..91647 (-)	441	WP_071561239.1	competence type IV pilus minor pilin ComGD	Machinery gene
IAR39_RS00450 (IAR39_00450)	comGC	91625..91942 (-)	318	WP_002465742.1	competence type IV pilus major pilin ComGC	Machinery gene
IAR39_RS00455 (IAR39_00455)	comGB	91955..93022 (-)	1068	WP_107529356.1	competence type IV pilus assembly protein ComGB	-
IAR39_RS00460 (IAR39_00460)	comGA	92994..93968 (-)	975	WP_002465784.1	competence type IV pilus ATPase ComGA	Machinery gene
IAR39_RS00465 (IAR39_00465)	-	94015..94638 (-)	624	WP_002465751.1	MBL fold metallo-hydrolase	-
IAR39_RS00470 (IAR39_00470)	-	94642..94965 (-)	324	WP_015364969.1	MTH1187 family thiamine-binding protein	-
IAR39_RS00475 (IAR39_00475)	-	94965..95951 (-)	987	WP_002465775.1	ROK family glucokinase	-
IAR39_RS00480 (IAR39_00480)	-	95948..96151 (-)	204	WP_002451885.1	YqgQ family protein	-
IAR39_RS00485 (IAR39_00485)	-	96141..97595 (-)	1455	WP_187835276.1	rhomboid family intramembrane serine protease	-
IAR39_RS00490 (IAR39_00490)	-	97592..98146 (-)	555	WP_058710070.1	5-formyltetrahydrofolate cyclo-ligase	-
IAR39_RS00495 (IAR39_00495)	rpmG	98378..98527 (-)	150	WP_002451882.1	50S ribosomal protein L33	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37163.35 Da
• Isoelectric Point: 9.2695

>NTDB_id=479990 IAR39_RS00460 WP_002465784.1 92994..93968(-) (comGA) [Staphylococcus warneri strain WS479]
MKILFQEIINKAIVYKASDVHFIPMEHYVHIKFRVNDTLTSYETLDIGIYRKLLVFMKFQAGLDVSTQQIAQSGRYTYKL
RSVYYLRISTLPLSIGSESCVIRIVPQYFQNKKETYEFNDFKHLMNKKQGLLLFTGPTGSGKSTLMYQMVMYAQKELNLN
VISIEDPVEQILKGITQISVNTKAGITYASSFKAILRCDPDVILIGEIRDAEIAKYVFQASLSGHLVLSTLHANDCKGAL
LRLLEMGITIQELSQAINLISNQRLITTSSQRRQLVCELMFKNQINYFFEHNQTMPRSFKRLSSKLDDMTKEGIICETIA
DKYI

Nucleotide

• Length: 975 bp

>NTDB_id=479990 IAR39_RS00460 WP_002465784.1 92994..93968(-) (comGA) [Staphylococcus warneri strain WS479]
TTGAAGATATTATTTCAAGAAATAATTAATAAAGCTATAGTTTATAAAGCAAGTGATGTACATTTTATTCCAATGGAACA
TTATGTTCATATAAAATTCAGAGTGAATGATACTTTAACATCATATGAAACTCTTGATATCGGAATTTATCGTAAATTAC
TTGTTTTTATGAAATTTCAAGCAGGATTGGATGTGTCGACGCAGCAAATCGCTCAAAGTGGTCGTTACACATATAAATTA
AGATCAGTTTATTACTTACGTATTTCAACTCTCCCTTTATCAATCGGTAGTGAAAGTTGTGTAATTAGAATAGTGCCTCA
ATATTTTCAAAATAAAAAGGAAACTTATGAATTTAACGATTTTAAACATTTAATGAACAAGAAACAAGGATTATTGCTTT
TTACAGGACCAACTGGTTCAGGTAAAAGCACACTCATGTATCAAATGGTTATGTACGCGCAAAAAGAATTGAATCTCAAT
GTCATATCTATCGAAGACCCCGTAGAACAAATTTTAAAAGGTATTACTCAAATCTCAGTGAATACTAAAGCCGGTATTAC
TTATGCAAGTTCATTTAAAGCCATACTTCGGTGCGATCCAGATGTTATTTTGATTGGAGAAATCAGAGACGCTGAAATAG
CAAAATATGTGTTTCAAGCAAGCTTGAGTGGCCATTTAGTATTAAGTACATTACATGCTAATGATTGCAAAGGGGCGTTG
TTAAGATTATTAGAGATGGGTATTACGATTCAAGAACTATCACAAGCTATCAATTTAATATCTAACCAACGTTTAATAAC
CACTTCAAGCCAACGACGTCAATTAGTTTGTGAACTTATGTTCAAAAATCAAATCAATTACTTTTTTGAACATAATCAAA
CAATGCCTAGATCTTTTAAGCGATTATCTTCAAAACTAGATGATATGACTAAAGAGGGAATTATATGTGAAACAATTGCT
GATAAATATATTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (8-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA	Staphylococcus aureus MW2	74.383	100	0.744
comGA	Staphylococcus aureus N315	74.383	100	0.744