Detailed information NTG0479500

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: IBC08_RS08770
• Genome accession: NZ_CP061019
• Coordinates: 1694292..1695392 (-)
• Length: 366 a.a.
• NCBI ID: WP_207559852.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 24853
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1689292..1700392

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBC08_RS08730 (IBC08_08700)	-	1689904..1690101 (-)	198	WP_014727723.1	helix-turn-helix transcriptional regulator	-
IBC08_RS08735 (IBC08_08705)	-	1690350..1691543 (-)	1194	WP_084831204.1	acetate kinase	-
IBC08_RS08740 (IBC08_08710)	comYH	1691599..1692555 (-)	957	WP_207559851.1	class I SAM-dependent methyltransferase	Machinery gene
IBC08_RS08745 (IBC08_08715)	comGG	1692600..1692917 (-)	318	WP_082309152.1	competence type IV pilus minor pilin ComGG	-
IBC08_RS08750 (IBC08_08720)	comYF	1692895..1693332 (-)	438	WP_082309153.1	competence type IV pilus minor pilin ComGF	Machinery gene
IBC08_RS08755 (IBC08_08725)	comGE	1693316..1693609 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
IBC08_RS08760 (IBC08_08730)	comYD	1693581..1694009 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
IBC08_RS08765 (IBC08_08735)	comYC	1693969..1694295 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
IBC08_RS08770 (IBC08_08740)	comYB	1694292..1695392 (-)	1101	WP_207559852.1	competence type IV pilus assembly protein ComGB	Machinery gene
IBC08_RS08775 (IBC08_08745)	comGA/cglA/cilD	1695274..1696215 (-)	942	WP_014608745.1	competence type IV pilus ATPase ComGA	Machinery gene
IBC08_RS08780 (IBC08_08750)	-	1696296..1696658 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 41885.04 Da
• Isoelectric Point: 10.1377

>NTDB_id=479500 IBC08_RS08770 WP_207559852.1 1694292..1695392(-) (comYB) [Streptococcus thermophilus strain 24853]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKETSLSLM
KESLIRGDRLYQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRHSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide

• Length: 1101 bp

>NTDB_id=479500 IBC08_RS08770 WP_207559852.1 1694292..1695392(-) (comYB) [Streptococcus thermophilus strain 24853]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAACATCCTTGTCCCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGTATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACATTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (236-356)

• Type II secretion system (T2SS), protein F (T2SSF) (51-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.678	93.443	0.511
comYB	Streptococcus mutans UA159	54.678	93.443	0.511
comYB	Streptococcus gordonii str. Challis substr. CH1	50.877	93.443	0.475
comGB/cglB	Streptococcus mitis NCTC 12261	50.453	90.437	0.456
comGB/cglB	Streptococcus mitis SK321	49.697	90.164	0.448
comGB/cglB	Streptococcus pneumoniae Rx1	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae D39	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae R6	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae TIGR4	49.695	89.617	0.445
comGB	Lactococcus lactis subsp. cremoris KW2	45.758	90.164	0.413