Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   IBC08_RS08740 Genome accession   NZ_CP061019
Coordinates   1691599..1692555 (-) Length   318 a.a.
NCBI ID   WP_207559851.1    Uniprot ID   A0A3G6JLL9
Organism   Streptococcus thermophilus strain 24853     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1686599..1697555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC08_RS08710 (IBC08_08680) - 1686630..1687885 (+) 1256 WP_011681055.1 ISL3-like element ISSth1 family transposase -
  IBC08_RS08715 (IBC08_08685) - 1687961..1688623 (-) 663 WP_011227583.1 type II CAAX endopeptidase family protein -
  IBC08_RS08720 (IBC08_08690) - 1688720..1689163 (-) 444 WP_084829882.1 CAAX protease -
  IBC08_RS10130 - 1689237..1689662 (-) 426 WP_087010196.1 CPBP family intramembrane glutamic endopeptidase -
  IBC08_RS08730 (IBC08_08700) - 1689904..1690101 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  IBC08_RS08735 (IBC08_08705) - 1690350..1691543 (-) 1194 WP_084831204.1 acetate kinase -
  IBC08_RS08740 (IBC08_08710) comYH 1691599..1692555 (-) 957 WP_207559851.1 class I SAM-dependent methyltransferase Machinery gene
  IBC08_RS08745 (IBC08_08715) comGG 1692600..1692917 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG -
  IBC08_RS08750 (IBC08_08720) comYF 1692895..1693332 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  IBC08_RS08755 (IBC08_08725) comGE 1693316..1693609 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  IBC08_RS08760 (IBC08_08730) comYD 1693581..1694009 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  IBC08_RS08765 (IBC08_08735) comYC 1693969..1694295 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  IBC08_RS08770 (IBC08_08740) comYB 1694292..1695392 (-) 1101 WP_207559852.1 competence type IV pilus assembly protein ComGB Machinery gene
  IBC08_RS08775 (IBC08_08745) comGA/cglA/cilD 1695274..1696215 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  IBC08_RS08780 (IBC08_08750) - 1696296..1696658 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35854.99 Da        Isoelectric Point: 4.7123

>NTDB_id=479496 IBC08_RS08740 WP_207559851.1 1691599..1692555(-) (comYH) [Streptococcus thermophilus strain 24853]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
VVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDPLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=479496 IBC08_RS08740 WP_207559851.1 1691599..1692555(-) (comYH) [Streptococcus thermophilus strain 24853]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GTGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCCGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTTTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G6JLL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

69.206

99.057

0.686
  comYH Streptococcus mutans UA140

69.206

99.057

0.686