Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IAQ00_RS21010 Genome accession   NZ_CP060818
Coordinates   4447077..4447622 (-) Length   181 a.a.
NCBI ID   WP_013024173.1    Uniprot ID   A0A8A4K787
Organism   Pantoea ananatis strain Lstri     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4442077..4452622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ00_RS20990 (IAQ00_20925) - 4443222..4443617 (+) 396 WP_014606933.1 transposase -
  IAQ00_RS20995 (IAQ00_20930) - 4444838..4445680 (-) 843 WP_064366253.1 AraC family transcriptional regulator -
  IAQ00_RS21000 (IAQ00_20935) - 4445795..4446313 (+) 519 WP_064366252.1 isochorismatase family protein -
  IAQ00_RS21005 (IAQ00_20940) - 4446410..4446982 (+) 573 WP_236708988.1 DUF1349 domain-containing protein -
  IAQ00_RS21010 (IAQ00_20945) ssb 4447077..4447622 (-) 546 WP_013024173.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IAQ00_RS21015 (IAQ00_20950) uvrA 4447844..4450672 (+) 2829 WP_047714330.1 excinuclease ABC subunit UvrA -
  IAQ00_RS21020 (IAQ00_20955) - 4451185..4452249 (+) 1065 WP_028722999.1 NAD(P)-dependent alcohol dehydrogenase -
  IAQ00_RS21025 (IAQ00_20960) - 4452288..4452611 (-) 324 WP_014606938.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19611.52 Da        Isoelectric Point: 5.2456

>NTDB_id=478600 IAQ00_RS21010 WP_013024173.1 4447077..4447622(-) (ssb) [Pantoea ananatis strain Lstri]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAPAAGGGQGNNNGWGQPQQPQQANNNQFSGGAQSRPQQQ
PSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=478600 IAQ00_RS21010 WP_013024173.1 4447077..4447622(-) (ssb) [Pantoea ananatis strain Lstri]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTACATGCCAAATGG
TGGCGCTGTCGCCAACATTACGCTGGCTACGTCGGAAAGCTGGCGCGATAAGCAGACCGGTGAAAACAAAGAAATCACTG
AATGGCACCGCGTAGTGCTGTTTGGCAAGCTGGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTATATT
GAAGGCCAGCTGCGTACCCGTAAATGGCAGGATCAGGGCGGCCAGGAACGTTACACCACCGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAAATGTTGGGTGGACGTCAGCAGGGCGGTAACGCGCCAGCAGCAGGCGGCGGCCAGGGCAATAACAACG
GTTGGGGCCAGCCTCAGCAACCGCAGCAGGCGAACAACAACCAGTTTAGCGGTGGCGCGCAGTCTCGCCCGCAGCAGCAG
CCAAGCGCACCTGCCAGCAACAACAATGAACCACCGATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.283

100

0.735
  ssb Glaesserella parasuis strain SC1401

57.812

100

0.613
  ssb Neisseria meningitidis MC58

46.154

100

0.464
  ssb Neisseria gonorrhoeae MS11

46.154

100

0.464