Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H8B22_RS02515 Genome accession   NZ_CP060820
Coordinates   529664..530158 (-) Length   164 a.a.
NCBI ID   WP_187712555.1    Uniprot ID   -
Organism   Agrilutibacter terrestris strain II4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 524664..535158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8B22_RS02495 (H8B22_02495) rfbD 526166..527053 (-) 888 WP_187712551.1 dTDP-4-dehydrorhamnose reductase -
  H8B22_RS02500 (H8B22_02500) rfbC 527050..527616 (-) 567 WP_187712552.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  H8B22_RS02505 (H8B22_02505) rfbA 527613..528500 (-) 888 WP_187712553.1 glucose-1-phosphate thymidylyltransferase RfbA -
  H8B22_RS02510 (H8B22_02510) rfbB 528544..529599 (-) 1056 WP_187712554.1 dTDP-glucose 4,6-dehydratase -
  H8B22_RS02515 (H8B22_02515) ssb 529664..530158 (-) 495 WP_187712555.1 single-stranded DNA-binding protein Machinery gene
  H8B22_RS02520 (H8B22_02520) - 530393..531298 (-) 906 WP_187712556.1 AraC family transcriptional regulator -
  H8B22_RS02525 (H8B22_02525) - 531646..532776 (+) 1131 WP_187712557.1 sensor histidine kinase -
  H8B22_RS02530 (H8B22_02530) - 532773..533564 (+) 792 WP_187712558.1 LytTR family DNA-binding domain-containing protein -
  H8B22_RS02535 (H8B22_02535) - 533620..534645 (+) 1026 WP_187712559.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17757.71 Da        Isoelectric Point: 5.9748

>NTDB_id=478604 H8B22_RS02515 WP_187712555.1 529664..530158(-) (ssb) [Agrilutibacter terrestris strain II4]
MARGINKVILVGNLGNDPETKYTQGGMAVTTISLATTSVRKDKDGQTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYVEG
SIRYDKFTGADGVEKYFTDIVADEMQMLGGRAEGGGAPRREFSGGGEARQSRPSQPQGGAPRREAAPAKANDFGADFADD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=478604 H8B22_RS02515 WP_187712555.1 529664..530158(-) (ssb) [Agrilutibacter terrestris strain II4]
ATGGCACGTGGCATCAACAAGGTCATCCTGGTCGGCAACCTGGGCAACGATCCGGAAACCAAGTACACCCAGGGCGGCAT
GGCCGTCACCACGATCAGCCTGGCGACCACCAGCGTGCGCAAGGACAAGGACGGCCAGACCCAGGAACGCACCGAATGGC
ACCGGGTGAAGTTCTTCGGCAAGCTCGGTGAAATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGTGCTACGTCGAAGGC
TCGATCCGCTACGACAAGTTCACCGGCGCCGACGGCGTCGAGAAGTACTTCACCGACATCGTCGCCGACGAGATGCAGAT
GCTCGGTGGCCGCGCCGAAGGCGGCGGCGCCCCGCGCCGCGAGTTCAGCGGCGGTGGTGAAGCCCGCCAGTCGCGTCCGT
CGCAGCCGCAGGGTGGCGCGCCGCGCCGCGAGGCGGCCCCGGCGAAGGCGAACGATTTCGGTGCGGACTTCGCGGATGAC
GATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

48.571

100

0.518
  ssb Neisseria gonorrhoeae MS11

48.571

100

0.518
  ssb Vibrio cholerae strain A1552

45.763

100

0.494
  ssb Glaesserella parasuis strain SC1401

40.223

100

0.439