Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   LYSZa5_RS09485 Genome accession   NZ_CP071730
Coordinates   2018269..2018793 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain LYSZa5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2013269..2023793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYSZa5_RS09470 (LYSZa5_09470) aroB 2014385..2015491 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  LYSZa5_RS09475 (LYSZa5_09475) aroK 2015541..2016059 (-) 519 WP_003095833.1 shikimate kinase AroK -
  LYSZa5_RS09480 (LYSZa5_09480) pilQ 2016071..2018215 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  LYSZa5_RS09485 (LYSZa5_09485) comL/pilP 2018269..2018793 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  LYSZa5_RS09490 (LYSZa5_09490) pilO 2018790..2019413 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  LYSZa5_RS09495 (LYSZa5_09495) pilN 2019410..2020006 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  LYSZa5_RS09500 (LYSZa5_09500) pilM 2020006..2021070 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  LYSZa5_RS09505 (LYSZa5_09505) - 2021255..2023723 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=478601 LYSZa5_RS09485 WP_003095836.1 2018269..2018793(-) (comL/pilP) [Pseudomonas aeruginosa strain LYSZa5]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=478601 LYSZa5_RS09485 WP_003095836.1 2018269..2018793(-) (comL/pilP) [Pseudomonas aeruginosa strain LYSZa5]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362