Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   J1N58_RS00800 Genome accession   NZ_CP071697
Coordinates   138856..139263 (+) Length   135 a.a.
NCBI ID   WP_024376295.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 133856..144263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS00775 (J1N58_00775) - 135261..135638 (+) 378 WP_029175711.1 DUF1033 family protein -
  J1N58_RS00780 (J1N58_00780) - 135657..136607 (-) 951 WP_029175710.1 S66 peptidase family protein -
  J1N58_RS00785 (J1N58_00785) comGA 136693..137643 (+) 951 WP_024376298.1 competence type IV pilus ATPase ComGA Machinery gene
  J1N58_RS00790 (J1N58_00790) comGB 137555..138592 (+) 1038 WP_050571398.1 competence type IV pilus assembly protein ComGB Machinery gene
  J1N58_RS00795 (J1N58_00795) comGC 138594..138875 (+) 282 WP_024376296.1 competence type IV pilus major pilin ComGC Machinery gene
  J1N58_RS00800 (J1N58_00800) comGD 138856..139263 (+) 408 WP_024376295.1 competence type IV pilus minor pilin ComGD Machinery gene
  J1N58_RS00805 (J1N58_00805) comGE 139235..139528 (+) 294 WP_024376294.1 competence type IV pilus minor pilin ComGE Machinery gene
  J1N58_RS00810 (J1N58_00810) comGF/cglF 139515..139949 (+) 435 WP_024376293.1 competence type IV pilus minor pilin ComGF Machinery gene
  J1N58_RS00815 (J1N58_00815) comGG 139927..140442 (+) 516 WP_207560409.1 competence type IV pilus minor pilin ComGG -
  J1N58_RS00820 (J1N58_00820) comGH 140499..141452 (+) 954 WP_024376291.1 class I SAM-dependent methyltransferase Machinery gene
  J1N58_RS00825 (J1N58_00825) - 141503..142690 (+) 1188 WP_207560410.1 acetate kinase -
  J1N58_RS00830 (J1N58_00830) - 143005..143556 (+) 552 WP_207560411.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15420.66 Da        Isoelectric Point: 9.6392

>NTDB_id=478341 J1N58_RS00800 WP_024376295.1 138856..139263(+) (comGD) [Streptococcus suis strain 1112S]
MLRRKNKAFTLFESLLTLLVVSFLAISLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASSRQKVNLAIGGQEVTNGYQ
AVEVPENVEVLEEKNIKFEENGGNSSLTKIRFRLSRKTVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=478341 J1N58_RS00800 WP_024376295.1 138856..139263(+) (comGD) [Streptococcus suis strain 1112S]
ATGCTAAGGCGAAAAAATAAGGCTTTTACCCTATTTGAAAGCCTGCTGACCTTGTTGGTTGTCAGTTTTCTGGCAATCAG
CCTGTCGGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCTATCTATAAAG
ACAGTCAGAAATTGGCAGCCAGTTCCCGCCAAAAAGTGAACCTTGCTATCGGTGGACAGGAAGTTACAAATGGTTATCAG
GCTGTAGAGGTGCCCGAAAATGTAGAGGTCTTGGAGGAGAAAAATATCAAATTTGAAGAAAATGGAGGAAATTCTTCCCT
GACCAAAATTCGTTTTCGGCTTAGTCGAAAGACAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

47.287

95.556

0.452
  comGD Streptococcus mutans UA140

47.287

95.556

0.452
  comGD Streptococcus gordonii str. Challis substr. CH1

48.031

94.074

0.452
  comGD/cglD Streptococcus pneumoniae Rx1

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae R6

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae D39

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae TIGR4

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis SK321

44.961

95.556

0.43
  comGD/cglD Streptococcus mitis NCTC 12261

44.961

95.556

0.43
  comGD Lactococcus lactis subsp. cremoris KW2

40.625

94.815

0.385