Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H9L24_RS14365 Genome accession   NZ_CP060790
Coordinates   3026257..3027639 (-) Length   460 a.a.
NCBI ID   WP_187735234.1    Uniprot ID   A0A7H0HCH6
Organism   Paenacidovorax monticola strain KACC 19171     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3021257..3032639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L24_RS14340 (H9L24_14340) - 3021740..3023041 (-) 1302 WP_187735229.1 O-antigen ligase family protein -
  H9L24_RS14345 (H9L24_14345) - 3023263..3024246 (+) 984 WP_187735230.1 capsular polysaccharide synthesis protein -
  H9L24_RS14350 (H9L24_14350) - 3024230..3024436 (-) 207 WP_187735231.1 zinc-finger domain-containing protein -
  H9L24_RS14355 (H9L24_14355) - 3024601..3025539 (-) 939 WP_187735232.1 branched-chain amino acid transaminase -
  H9L24_RS14360 (H9L24_14360) - 3025590..3026006 (-) 417 WP_187735233.1 glycerate kinase -
  H9L24_RS14365 (H9L24_14365) radA 3026257..3027639 (-) 1383 WP_187735234.1 DNA repair protein RadA Machinery gene
  H9L24_RS14370 (H9L24_14370) - 3027695..3028672 (+) 978 WP_187735235.1 2-dehydropantoate 2-reductase -
  H9L24_RS14375 (H9L24_14375) - 3028733..3029347 (+) 615 WP_187735236.1 glutathione S-transferase family protein -
  H9L24_RS14380 (H9L24_14380) - 3029360..3029707 (-) 348 WP_223009077.1 hypothetical protein -
  H9L24_RS14385 (H9L24_14385) - 3029846..3030295 (-) 450 WP_187735238.1 hypothetical protein -
  H9L24_RS14390 (H9L24_14390) - 3030400..3031179 (-) 780 WP_187735239.1 IclR family transcriptional regulator C-terminal domain-containing protein -
  H9L24_RS14395 (H9L24_14395) - 3031306..3032301 (+) 996 WP_187735240.1 tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 48028.44 Da        Isoelectric Point: 7.1549

>NTDB_id=478344 H9L24_RS14365 WP_187735234.1 3026257..3027639(-) (radA) [Paenacidovorax monticola strain KACC 19171]
MAKDKTIFTCSECGGTSPRWLGKCPACGAWNTLVETVAESAGGGKNRLSAPQYAGLAQAQAVMPLSAIEATEVARTASGL
EELDRVLGGGVVEGGVVLIGGDPGIGKSTLLLQAMDALHRVGLPTLYVTGEESGAQVALRSRRLGLDQSQVSVLAEIQLE
KILATIEATQPAVCVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRLAKATGIAVILVGHVTKEGALAGPRVLEHMVDTV
LYFEGDTHSSYRLVRAIKNRFGAVNEIGVFAMTERGLKGVSNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDG
GGPSPRRLSVGLERDRLAMLLAVLHRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRSLPKGFLAFGEVG
LAGEVRPAPRGQERLKEAAKLGFSVAVVPKANAPKKPIEGLTIHAVERVDQAMDIVRGIG

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=478344 H9L24_RS14365 WP_187735234.1 3026257..3027639(-) (radA) [Paenacidovorax monticola strain KACC 19171]
ATGGCCAAGGACAAAACCATCTTCACCTGCAGCGAATGCGGCGGCACCAGCCCGCGCTGGCTGGGCAAATGCCCGGCCTG
CGGCGCCTGGAACACGCTGGTCGAGACCGTGGCCGAGAGCGCGGGCGGCGGCAAGAACCGCCTGAGCGCCCCGCAGTACG
CGGGCCTGGCCCAGGCGCAGGCCGTGATGCCGCTGTCGGCCATCGAGGCCACCGAGGTGGCGCGCACGGCCAGCGGCCTG
GAGGAGCTGGACCGCGTGCTGGGCGGCGGCGTGGTCGAGGGCGGCGTGGTGCTCATCGGCGGCGACCCGGGCATCGGCAA
GTCCACCCTGCTGCTGCAGGCCATGGACGCGCTGCACCGCGTCGGCCTGCCCACGCTGTACGTGACGGGCGAGGAGAGCG
GCGCCCAGGTGGCCCTGCGCTCGCGCCGCCTGGGGCTCGACCAGAGCCAGGTGAGCGTGCTGGCCGAGATCCAGCTCGAG
AAGATCCTCGCCACCATCGAGGCCACGCAGCCCGCCGTCTGCGTGATCGACTCGATCCAGACCGTCTATTCGGACCAGCT
CACCAGCGCGCCGGGCTCGGTGGCCCAGGTGCGCGAGTGCGCGGCCCATCTCACGCGCCTGGCCAAGGCCACGGGCATCG
CCGTCATCCTCGTGGGCCATGTGACCAAGGAGGGCGCGCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACGGTG
CTGTACTTCGAGGGCGACACGCACAGCAGCTACCGCCTGGTGCGCGCGATCAAGAACCGCTTCGGCGCGGTGAACGAGAT
CGGCGTGTTCGCGATGACCGAGCGCGGCCTCAAGGGCGTGTCCAACCCCAGCGCCATCTTTCTGAGCCAGCACAGCGAGC
CGGTGCCGGGCTCGTGCGTGCTCGTCACGCTGGAGGGCACGCGGCCCATGCTGGTGGAGATCCAGGCCCTGGTCGACGGC
GGCGGGCCCAGCCCGCGGCGCCTGTCGGTGGGCCTGGAGCGCGACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCA
CGCGGGCGTGGCCTGCGCGGACCAGGACGTGTTCGTCAATGCCGTGGGCGGCGTGCGCATCAGCGAGCCCGCGGCCGATC
TGGCCGTGATGCTGTCCATCACCTCCAGCCTGCGCGGTCGCTCCCTGCCCAAGGGCTTTCTCGCATTCGGCGAGGTGGGG
CTGGCGGGCGAGGTGCGGCCCGCGCCGCGCGGGCAGGAGCGCCTGAAGGAGGCCGCGAAACTGGGCTTCAGCGTGGCCGT
GGTGCCCAAGGCCAACGCGCCCAAGAAGCCCATCGAGGGCCTGACCATCCACGCCGTGGAGCGCGTGGACCAGGCCATGG
ACATCGTGCGCGGAATAGGGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H0HCH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.342

99.13

0.489
  radA Streptococcus mitis NCTC 12261

46.288

99.565

0.461
  radA Streptococcus pneumoniae Rx1

48.046

94.565

0.454
  radA Streptococcus pneumoniae D39

48.046

94.565

0.454
  radA Streptococcus pneumoniae R6

48.046

94.565

0.454
  radA Streptococcus pneumoniae TIGR4

48.046

94.565

0.454
  radA Streptococcus mitis SK321

48.046

94.565

0.454