Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMBB_RS02235 Genome accession   NC_017505
Coordinates   412254..413750 (+) Length   498 a.a.
NCBI ID   WP_014575168.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha710     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 407254..418750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBB_RS02220 (NMBB_0443) putP 409911..411437 (-) 1527 WP_002220352.1 sodium/proline symporter PutP -
  NMBB_RS02230 (NMBB_0446) - 411920..412240 (+) 321 WP_002216505.1 accessory factor UbiK family protein -
  NMBB_RS02235 (NMBB_0447) comM 412254..413750 (+) 1497 WP_014575168.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMBB_RS02240 (NMBB_0448) ftsN 413856..414701 (+) 846 WP_002218775.1 cell division protein FtsN -
  NMBB_RS02245 (NMBB_0449) dsbA1 414704..415348 (+) 645 WP_002218776.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  NMBB_RS02250 (NMBB_0450) - 415382..416203 (+) 822 WP_002218777.1 undecaprenyl-diphosphate phosphatase -
  NMBB_RS02265 (NMBB_0451) - 416785..418002 (-) 1218 WP_014575169.1 class I SAM-dependent methyltransferase -
  NMBB_RS02270 (NMBB_0452) mraZ 418281..418736 (+) 456 WP_002218779.1 division/cell wall cluster transcriptional repressor MraZ -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53415.42 Da        Isoelectric Point: 6.7766

>NTDB_id=47778 NMBB_RS02235 WP_014575168.1 412254..413750(+) (comM) [Neisseria meningitidis alpha710]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMCGITVYGARSL
GEVAAHLNGIEPLAQTECSVPQMPSEHGGQPDLCDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPIKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSASVLERVIAARDKQYARQGKVNAALSVSELDSQARIQKEAQEALGGLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=47778 NMBB_RS02235 WP_014575168.1 412254..413750(+) (comM) [Neisseria meningitidis alpha710]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGTGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCGCATTTCAACATCGTCGGGCTGCCCGATACGGAAGTAAAGGAAAGTCGCGACCGCGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTGAATTCCCCGCCAAAAAAATCACCGTCAACCTCGCCCCCGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATCCTTGCCGCATCGGGGCAGGTTGCGCCCGAAAAACTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGCTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAACGCAGGACAAGCCGCCGTGATGTGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGTGAAGTCGCCGCCCATTTGAACGGCATCGAACCTTTGGCGCAAACCGAATGTTCCGTACCGCAAATGCCGTCTGAACA
TGGCGGACAACCTGATTTGTGCGATGTGAAAGGTCAGCACACCGCGCGCCTTGCTTTGGAAATCGCTGCCGCAGGCGGAC
ACAGCCTCTTGATGATGGGTCCGCCGGGAACGGGCAAGTCTATGCTCTCCCAACGGCTGCCCGGCATCCTGCCGCCGCTG
ACCGAAGACGAATTGGTAGAAGTTTGGGCATTGCGTTCGCTCCTGCCCAACCACCAACAACAACTCGACAGCAACCGTCC
TTTCCGCAGTCCGCATCACAGCGCCAGCGCGGCGGCTATGGTCGGCGGCGGTTCGGATCCGCGCCCGGGCGAAATTTCAT
TGGCGCACCACGGCGTATTGTTTTTGGACGAGCTGCCCGAGTTCGACCGCAAAGTTTTAGAAGTTTTGCGCGAACCGTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCTGCCAAATTCCAACTTGTTGCCGCCATGAA
CCCTTGTCCTTGCGGTTATCTCGGGCATCCCATCAAACCCTGCCGTTGCACGCCCGAAAGCGTCGCGCGTTACCGCAGCA
AGATTTCCGGCCCGCTGCTCGACCGCATCGATTTGACCATCGAAGTCCCGAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCAGGGGAAAGCAGCGCGTCCGTTTTGGAACGCGTTATCGCCGCCAGAGACAAACAATACGCACGGCAAGGCAAAGT
GAATGCCGCTTTGAGCGTCAGCGAACTCGATTCCCAAGCCCGCATTCAAAAAGAAGCGCAGGAAGCATTGGGCGGCCTGC
TGGAAAAACTCTCCCTTTCCGCCCGCAGCTTCCACCGCATTATGCGCGTGGCGCGTACATTGGCGGATTTGGCGGGCGAC
GAAGAAGTCGGCAGAAGCCACGTCATGAAAGCCATAGGTTTCCGTCGCGCTTTATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.187

100

0.536
  comM Vibrio campbellii strain DS40M4

52.314

99.799

0.522
  comM Haemophilus influenzae Rd KW20

50

100

0.502
  comM Glaesserella parasuis strain SC1401

48.81

100

0.494
  comM Legionella pneumophila str. Paris

46.733

100

0.474
  comM Legionella pneumophila strain ERS1305867

46.733

100

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.942

100

0.434

Multiple sequence alignment