Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   NMBB_RS02245 Genome accession   NC_017505
Coordinates   414704..415348 (+) Length   214 a.a.
NCBI ID   WP_002218776.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha710     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 409704..420348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBB_RS02220 (NMBB_0443) putP 409911..411437 (-) 1527 WP_002220352.1 sodium/proline symporter PutP -
  NMBB_RS02230 (NMBB_0446) - 411920..412240 (+) 321 WP_002216505.1 accessory factor UbiK family protein -
  NMBB_RS02235 (NMBB_0447) comM 412254..413750 (+) 1497 WP_014575168.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMBB_RS02240 (NMBB_0448) ftsN 413856..414701 (+) 846 WP_002218775.1 cell division protein FtsN -
  NMBB_RS02245 (NMBB_0449) dsbA1 414704..415348 (+) 645 WP_002218776.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  NMBB_RS02250 (NMBB_0450) - 415382..416203 (+) 822 WP_002218777.1 undecaprenyl-diphosphate phosphatase -
  NMBB_RS02265 (NMBB_0451) - 416785..418002 (-) 1218 WP_014575169.1 class I SAM-dependent methyltransferase -
  NMBB_RS02270 (NMBB_0452) mraZ 418281..418736 (+) 456 WP_002218779.1 division/cell wall cluster transcriptional repressor MraZ -
  NMBB_RS02275 (NMBB_0453) rsmH 418733..419719 (+) 987 WP_002218781.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  NMBB_RS02280 (NMBB_0454) ftsL 419716..419979 (+) 264 WP_002232818.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23890.90 Da        Isoelectric Point: 9.8297

>NTDB_id=47779 NMBB_RS02245 WP_002218776.1 414704..415348(+) (dsbA1) [Neisseria meningitidis alpha710]
MKLKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH
VVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKIRLENRAVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQK
LTEQYRIDSTPTVVVGGKYRVIFNNGFDGGVHTIKELVAKVRAERKLSNHPVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=47779 NMBB_RS02245 WP_002218776.1 414704..415348(+) (dsbA1) [Neisseria meningitidis alpha710]
ATGAAGCTCAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAGGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGTCGGGTAAAATTGAGGTTTTGGAATTTTTCGGCTATTTCTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAACTGGGCAAGGCATTGCCGTCTGATGCCTATTTGAGGACGGAGCAC
GTGGTCTGGCAGCCTGAAATGCTCGGTCTGGCAAGAATGGCGGCTGCCGTCAATTTGTCGGGTTTGAAATATCAGGCAAA
CCCTGCCGTGTTTAAAGCAGTTTACGAACAAAAAATCCGCTTGGAAAACAGGGCTGTTGCCGGAAAATGGGCTTTGTCTC
AAAAAGGCTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCCCCCGAAGCTGCCGCCGCCGCATTAAAAATGCAGAAA
CTGACGGAACAATACCGCATCGACAGCACGCCGACCGTTGTCGTCGGCGGAAAATACCGCGTTATCTTCAATAACGGCTT
TGACGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGCGGAGCGCAAACTGTCAAACCATCCTGTGCAAA
AATAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

56.15

87.383

0.491
  dsbA2 Neisseria meningitidis MC58

50.811

86.449

0.439

Multiple sequence alignment