Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   J1G54_RS09015 Genome accession   NZ_CP071491
Coordinates   1779599..1780057 (-) Length   152 a.a.
NCBI ID   WP_203399226.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1807     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1774599..1785057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G54_RS08995 (J1G54_08995) dapE 1775095..1776228 (-) 1134 WP_160436358.1 succinyl-diaminopimelate desuccinylase -
  J1G54_RS09000 (J1G54_09000) - 1776312..1776980 (-) 669 WP_035491631.1 prepilin peptidase -
  J1G54_RS09005 (J1G54_09005) pilC 1776977..1778173 (-) 1197 WP_207342679.1 type II secretion system F family protein Machinery gene
  J1G54_RS09010 (J1G54_09010) pilB 1778166..1779551 (-) 1386 WP_203399225.1 GspE/PulE family protein Machinery gene
  J1G54_RS09015 (J1G54_09015) pilA 1779599..1780057 (-) 459 WP_203399226.1 pilin Machinery gene
  J1G54_RS09020 (J1G54_09020) radA/sms 1780245..1781621 (+) 1377 WP_005711784.1 DNA repair protein RadA Machinery gene
  J1G54_RS09025 (J1G54_09025) gmk 1781674..1782300 (-) 627 WP_203399227.1 guanylate kinase -
  J1G54_RS09030 (J1G54_09030) gpt 1782538..1783017 (-) 480 WP_005714020.1 xanthine phosphoribosyltransferase -
  J1G54_RS09035 (J1G54_09035) - 1783197..1784651 (+) 1455 WP_021117775.1 aminoacyl-histidine dipeptidase -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16092.58 Da        Isoelectric Point: 9.0925

>NTDB_id=477348 J1G54_RS09015 WP_203399226.1 1779599..1780057(-) (pilA) [Glaesserella parasuis strain GHP1807]
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNTGALTNCTGGSNGV
QANKTDVADAKYLKSISVASGTITVEGKSSIDGYGYTMTPKFANNNITWATSCRGSDISLFPANFCGTKATQ

Nucleotide


Download         Length: 459 bp        

>NTDB_id=477348 J1G54_RS09015 WP_203399226.1 1779599..1780057(-) (pilA) [Glaesserella parasuis strain GHP1807]
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTGATGATCGTGATCGCCATCATTGC
TATTTTAGCCACGATTGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCTGCACTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACACAGGGGCTTTAACTAACTGTACAGGGGGTTCTAACGGCGTT
CAAGCCAATAAAACCGATGTTGCCGATGCTAAATATCTTAAATCTATTTCCGTCGCTTCGGGGACAATCACCGTAGAAGG
CAAAAGCAGCATTGATGGCTACGGCTACACAATGACCCCGAAATTTGCCAATAACAACATTACTTGGGCAACAAGCTGTC
GAGGTTCTGACATTAGTTTATTCCCTGCGAATTTCTGTGGGACAAAAGCCACACAATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

86.275

100

0.868
  pilA Haemophilus influenzae 86-028NP

56.757

97.368

0.553
  pilA Haemophilus influenzae Rd KW20

56.757

97.368

0.553
  comP Acinetobacter baylyi ADP1

46.094

84.211

0.388