Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J1G54_RS09005 Genome accession   NZ_CP071491
Coordinates   1776977..1778173 (-) Length   398 a.a.
NCBI ID   WP_207342679.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1807     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1771977..1783173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G54_RS08980 (J1G54_08980) - 1772693..1773082 (-) 390 WP_010787002.1 SufE family protein -
  J1G54_RS08985 (J1G54_08985) clpP 1773183..1773764 (+) 582 WP_005711766.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  J1G54_RS08990 (J1G54_08990) clpX 1773771..1775021 (+) 1251 WP_203399223.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  J1G54_RS08995 (J1G54_08995) dapE 1775095..1776228 (-) 1134 WP_160436358.1 succinyl-diaminopimelate desuccinylase -
  J1G54_RS09000 (J1G54_09000) - 1776312..1776980 (-) 669 WP_035491631.1 prepilin peptidase -
  J1G54_RS09005 (J1G54_09005) pilC 1776977..1778173 (-) 1197 WP_207342679.1 type II secretion system F family protein Machinery gene
  J1G54_RS09010 (J1G54_09010) pilB 1778166..1779551 (-) 1386 WP_203399225.1 GspE/PulE family protein Machinery gene
  J1G54_RS09015 (J1G54_09015) pilA 1779599..1780057 (-) 459 WP_203399226.1 pilin Machinery gene
  J1G54_RS09020 (J1G54_09020) radA/sms 1780245..1781621 (+) 1377 WP_005711784.1 DNA repair protein RadA Machinery gene
  J1G54_RS09025 (J1G54_09025) gmk 1781674..1782300 (-) 627 WP_203399227.1 guanylate kinase -
  J1G54_RS09030 (J1G54_09030) gpt 1782538..1783017 (-) 480 WP_005714020.1 xanthine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 45724.53 Da        Isoelectric Point: 10.1230

>NTDB_id=477346 J1G54_RS09005 WP_207342679.1 1776977..1778173(-) (pilC) [Glaesserella parasuis strain GHP1807]
MNNIYEFQWKGRNRFGQKQTGRQLAESREVLEKRLQQKGYSQLRISRHFALPTAPKKEEINQFMQQLALLIQAKIPLKQS
LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFEKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLAKKIK
KILFYPVFILAISITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSHFLQHSILTLIILCVLCFLLIHILNKKTDL
IKRLKFIILSHIPILKGIIQYSHIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQRSLATTLTYLKQGYRLADSLD
PKLFPTDMLQMIAIGEQSGKLSPMLQQISNGYQQRLDYQIDILSQLLEPMLMVLMGIIVGTILVGLYLPIFDMGAMIE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=477346 J1G54_RS09005 WP_207342679.1 1776977..1778173(-) (pilC) [Glaesserella parasuis strain GHP1807]
ATGAATAACATTTATGAATTTCAATGGAAAGGACGCAACCGCTTTGGACAAAAGCAAACAGGGCGACAGCTTGCCGAAAG
CCGAGAAGTGCTAGAAAAACGCTTGCAACAAAAAGGCTATAGCCAGTTACGCATTAGCCGACATTTTGCCTTGCCGACGG
CACCGAAAAAGGAAGAAATTAATCAATTTATGCAACAGTTGGCATTATTAATTCAAGCCAAAATCCCCCTAAAACAGAGT
TTGGTAATGTTGCTGGAAACTTGCCAAAATCGCACCTTTTACCGTTGGCAACAAGAGACAATCCGCTTGATTGAAGCTGG
CTTTGCCTTATCCGTTGCCTTTGAAAAACAGGGGAAATATATCAATCCACAAGAGATCCAATTAATTAAAATGGCAGAAA
CAAGCGGTAATTTAGGGCTGATTTTAACCAATATTGCACAACGCCGTGAAAAATCGGAAAAATTAGCCAAGAAAATTAAA
AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTATTTCAATCACACTCTCTATTTTATTATTACTTTTTATTGTGCCACA
ATTTGCAGAACTTTATGGCTCAAAAGGAAAATCATTACCTTTAATTACCGAAATACTCTTTAGCCTATCTCATTTTCTAC
AACACTCTATTTTAACGCTAATTATTTTATGTGTGTTATGTTTTCTATTAATTCATATTTTAAATAAAAAAACAGATCTT
ATTAAACGCCTAAAGTTTATTATATTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACACATTATCTTTTT
TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG
ATGATATTTTATTACAACGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGTTATCGTTTAGCCGACAGTTTAGAT
CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA
AATCAGCAACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATGTTAATGGTGT
TAATGGGAATTATTGTAGGAACTATTTTAGTCGGTTTGTATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

98.744

100

0.987
  pilC Haemophilus influenzae Rd KW20

38.155

100

0.384
  pilC Haemophilus influenzae 86-028NP

37.905

100

0.382