Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NMV_RS01860 Genome accession   NC_017501
Coordinates   348747..349607 (-) Length   286 a.a.
NCBI ID   WP_002216403.1    Uniprot ID   A0A9K2PRG6
Organism   Neisseria meningitidis 8013     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343747..354607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS01830 (NMV_0362) ispB 344235..345209 (+) 975 WP_014573760.1 octaprenyl diphosphate synthase -
  NMV_RS01835 (NMV_0363) - 345214..345660 (+) 447 WP_002220271.1 DUF441 domain-containing protein -
  NMV_RS01845 (NMV_0364) pilF 346150..347826 (+) 1677 WP_002231695.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NMV_RS01850 (NMV_0365) - 347911..348120 (-) 210 WP_002226982.1 DNA gyrase inhibitor YacG -
  NMV_RS01855 (NMV_0366) coaE 348113..348745 (-) 633 WP_002226983.1 dephospho-CoA kinase -
  NMV_RS01860 (NMV_0367) pilD 348747..349607 (-) 861 WP_002216403.1 prepilin peptidase Machinery gene
  NMV_RS01865 (NMV_0368) pilG 349681..350913 (-) 1233 WP_002216405.1 type 4 pilus assembly protein PilG Machinery gene
  NMV_RS01870 (NMV_0369) pgi 351423..353066 (+) 1644 WP_014573761.1 glucose-6-phosphate isomerase -
  NMV_RS01875 (NMV_0371) dapD 353277..354098 (+) 822 WP_002220281.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31345.37 Da        Isoelectric Point: 8.2213

>NTDB_id=47730 NMV_RS01860 WP_002216403.1 348747..349607(-) (pilD) [Neisseria meningitidis 8013]
MSDLSVLSPFAVPLAAVFGLLVGSFLNVVIYRVPVMMERGWTVFAKEYLNLPLTEEESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLVLTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWLLCAVYKLIKGEIGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVL

Nucleotide


Download         Length: 861 bp        

>NTDB_id=47730 NMV_RS01860 WP_002216403.1 348747..349607(-) (pilD) [Neisseria meningitidis 8013]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCGGTGTTCGGGCTGCTGGTCGGCAGTTTCTTAAA
CGTCGTCATTTACCGCGTGCCGGTCATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAATATTTAAACCTGCCGCTGA
CCGAAGAGGAAAGCCGTACCTTCAACCTGATGAAACCGGATTCCTGCTGTCCCAAATGCCGCGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGTTACCTGCTCCTGCGCGGCAAATGCGCCTCCTGTCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACGCTGGGCGGAT
TGGTACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACACTGCCC
TTGATTTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATGGTTCGATATGGCTTTTATGCGCGGTATATAAACTGATTAAAGGCGAAATCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCGCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCAGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGCTGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(134-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

95.789

99.65

0.955
  pilD Vibrio cholerae strain A1552

44.444

100

0.448
  pilD Acinetobacter baumannii D1279779

47.348

92.308

0.437
  pilD Acinetobacter nosocomialis M2

47.348

92.308

0.437
  pilD Vibrio campbellii strain DS40M4

44.928

96.503

0.434

Multiple sequence alignment