Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SPN032672_RS06490 Genome accession   NC_021003
Coordinates   1203123..1203893 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae SPN032672     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1198123..1208893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN032672_RS06470 - 1200043..1200480 (+) 438 WP_000076479.1 CoA-binding protein -
  SPN032672_RS13675 - 1200521..1200769 (+) 249 WP_041178986.1 hypothetical protein -
  SPN032672_RS06480 - 1200798..1201808 (-) 1011 WP_000009157.1 YeiH family protein -
  SPN032672_RS06485 - 1201957..1203126 (+) 1170 WP_000366376.1 pyridoxal phosphate-dependent aminotransferase -
  SPN032672_RS06490 recO 1203123..1203893 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  SPN032672_RS06495 plsX 1203890..1204882 (+) 993 WP_000717456.1 phosphate acyltransferase PlsX -
  SPN032672_RS06500 - 1204888..1205121 (+) 234 WP_000136449.1 acyl carrier protein -
  SPN032672_RS12025 - 1205158..1205458 (+) 301 Protein_1191 transposase family protein -
  SPN032672_RS06505 blpU 1205661..1205891 (+) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  SPN032672_RS13985 - 1205894..1206019 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  SPN032672_RS06520 comA 1206606..1208759 (+) 2154 WP_000668299.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=47729 SPN032672_RS06490 WP_000616164.1 1203123..1203893(+) (recO) [Streptococcus pneumoniae SPN032672]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=47729 SPN032672_RS06490 WP_000616164.1 1203123..1203893(+) (recO) [Streptococcus pneumoniae SPN032672]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992

Multiple sequence alignment