Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   NMV_RS00630 Genome accession   NC_017501
Coordinates   123270..124457 (+) Length   395 a.a.
NCBI ID   WP_014573704.1    Uniprot ID   A0A9K2KLV9
Organism   Neisseria meningitidis 8013     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 118270..129457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS00615 (NMV_0124) - 119190..119789 (+) 600 WP_002216221.1 DUF4390 domain-containing protein -
  NMV_RS00620 (NMV_0125) - 119789..121909 (+) 2121 WP_014573703.1 sensor histidine kinase -
  NMV_RS00625 (NMV_0126) - 121902..123179 (+) 1278 WP_002234456.1 sigma-54-dependent transcriptional regulator -
  NMV_RS00630 (NMV_0127) dprA 123270..124457 (+) 1188 WP_014573704.1 DNA-processing protein DprA Machinery gene
  NMV_RS00635 (NMV_0128) - 124483..124944 (+) 462 WP_002215351.1 DUF494 domain-containing protein -
  NMV_RS00640 (NMV_0129) topA 125016..127322 (+) 2307 WP_014573705.1 type I DNA topoisomerase -
  NMV_RS00645 (NMV_0130) - 127395..128090 (-) 696 WP_002245789.1 hypothetical protein -
  NMV_RS00650 (NMV_0131) - 128110..128661 (-) 552 WP_002215355.1 hypothetical protein -
  NMV_RS00655 (NMV_0132) - 128780..129157 (+) 378 WP_002233408.1 helix-turn-helix domain-containing protein -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41974.14 Da        Isoelectric Point: 6.1732

>NTDB_id=47725 NMV_RS00630 WP_014573704.1 123270..124457(+) (dprA) [Neisseria meningitidis 8013]
MTEDERFAWLQLAFTPYIGAESFLLLMRRFGSAQNALSAPAEQVAALIRHKQALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRTLSGKGIPVVSGMASGIDT
AAHQGALEAEGGTIAVWGTGIDRIYPPSNKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLVECLDDILNECPGLLQNTGASSYSINKDTPDTGSRAVQT
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=47725 NMV_RS00630 WP_014573704.1 123270..124457(+) (dprA) [Neisseria meningitidis 8013]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCCGTTTCGGCAGCGCGCAAAATGCCCTGTCCGCACCGGCGGAACAGGTGGCGGCACTGATACGGCACAAACAGGCGC
TTGAGGCTTGGCGCAATGCGGAAAAACGCGCTCTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGCCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGTAGGACGTTGTCTGGGAAAGGCATTCCCGTTGTGTCGGGTATGGCTTCGGGCATCGATACC
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCATCGCTGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GTCCAATAAAAACCTTGCCTATGAAATCGCCGAAAAAGGGCTGATTGTCAGCGAGTTCCCCATCGGTACGCGGCCGTATG
CCGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCGCTGTCGCAGGTTACGCTGGTGGTTGAAGCTGCGTTGGAATCC
GGTTCGCTGATTACCGCCGGCTTGGCGGCAGAAATGGGGCGCGAAGTGATGGCGGTACCCGGTTCGATAGACAATCCGCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGCGCGAAATTGGTGGAATGCCTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCATCATATTCTATAAATAAGGATACGCCCGACACGGGCAGTCGCGCCGTTCAGACG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCAATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

96.962

100

0.97

  dprA Neisseria gonorrhoeae strain FA1090

96.709

100

0.967

  dprA Neisseria meningitidis MC58

91.688

100

0.922

  dprA Neisseria meningitidis strain C311

91.688

100

0.922

  dprA Vibrio cholerae strain A1552

37.783

100

0.38

  dprA Vibrio campbellii strain DS40M4

36.856

98.228

0.362

  dprA Glaesserella parasuis strain SC1401

42.059

86.076

0.362


Multiple sequence alignment