Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   J1F19_RS08030 Genome accession   NZ_CP071439
Coordinates   1678082..1679074 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain EcPNK004     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1673082..1684074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1F19_RS08000 (J1F19_08000) - 1673554..1674417 (+) 864 WP_001223107.1 tetratricopeptide repeat protein -
  J1F19_RS08005 (J1F19_08005) pphB 1674442..1675098 (+) 657 WP_024187450.1 protein-serine/threonine phosphatase -
  J1F19_RS08010 (J1F19_08010) - 1675140..1675376 (-) 237 WP_000562983.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  J1F19_RS08015 (J1F19_08015) - 1675387..1676814 (-) 1428 WP_000863186.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  J1F19_RS08020 (J1F19_08020) - 1676814..1677407 (-) 594 WP_001237176.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  J1F19_RS08025 (J1F19_08025) - 1677554..1677961 (+) 408 WP_001208065.1 MarR family transcriptional regulator -
  J1F19_RS08030 (J1F19_08030) rpoS 1678082..1679074 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  J1F19_RS08035 (J1F19_08035) nlpD 1679137..1680276 (-) 1140 WP_001272592.1 murein hydrolase activator NlpD -
  J1F19_RS08040 (J1F19_08040) pcm 1680416..1681042 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  J1F19_RS08045 (J1F19_08045) surE 1681036..1681797 (-) 762 WP_001305779.1 5'/3'-nucleotidase SurE -
  J1F19_RS08050 (J1F19_08050) truD 1681778..1682827 (-) 1050 WP_000568953.1 tRNA pseudouridine(13) synthase TruD -
  J1F19_RS08055 (J1F19_08055) ispF 1682824..1683303 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  J1F19_RS08060 (J1F19_08060) ispD 1683303..1684013 (-) 711 WP_000246141.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=476908 J1F19_RS08030 WP_000081550.1 1678082..1679074(-) (rpoS) [Escherichia coli strain EcPNK004]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=476908 J1F19_RS08030 WP_000081550.1 1678082..1679074(-) (rpoS) [Escherichia coli strain EcPNK004]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGACGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
GAAAGCCTTAGTTGAAGAGGAACCCAGTGATAACGATTTGGCTGAAGAGGAGCTGTTATCGCAAGGGGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCGCCACTGTTAACGGCCGAAGAAGAAGTTTATTTCGCG
CGTCGCGCACTGCGTGGAGATGTCGCTTCACGTCGCCGGATGATTGAAAGTAACCTGCGTCTGGTCGTGAAGATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGCTGTTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATCCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715