Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   J1F19_RS09185 Genome accession   NZ_CP071439
Coordinates   1930185..1931165 (-) Length   326 a.a.
NCBI ID   WP_001309723.1    Uniprot ID   -
Organism   Escherichia coli strain EcPNK004     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1925185..1936165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1F19_RS09155 (J1F19_09155) yggI 1925909..1926406 (+) 498 WP_000858396.1 SprT family zinc-dependent metalloprotease -
  J1F19_RS09160 (J1F19_09160) endA 1926501..1927208 (+) 708 WP_000286500.1 deoxyribonuclease I -
  J1F19_RS09165 (J1F19_09165) rsmE 1927288..1928019 (+) 732 WP_001222509.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  J1F19_RS09170 (J1F19_09170) gshB 1928032..1928982 (+) 951 WP_000593273.1 glutathione synthase -
  J1F19_RS09175 (J1F19_09175) yqgE 1929091..1929654 (+) 564 WP_001053178.1 YqgE/AlgH family protein -
  J1F19_RS09180 (J1F19_09180) ruvX 1929654..1930070 (+) 417 WP_000017111.1 Holliday junction resolvase RuvX -
  J1F19_RS09185 (J1F19_09185) pilT 1930185..1931165 (-) 981 WP_001309723.1 type IV pilus twitching motility protein PilT Machinery gene
  J1F19_RS09190 (J1F19_09190) yggS 1931183..1931887 (+) 705 WP_000997806.1 pyridoxal phosphate homeostasis protein -
  J1F19_RS09195 (J1F19_09195) yggT 1931905..1932471 (+) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  J1F19_RS09200 (J1F19_09200) yggU 1932468..1932758 (+) 291 WP_001277222.1 DUF167 family protein YggU -
  J1F19_RS09205 (J1F19_09205) rdgB 1932766..1933359 (+) 594 WP_001174736.1 XTP/dITP diphosphatase -
  J1F19_RS09210 (J1F19_09210) hemW 1933352..1934488 (+) 1137 WP_000239946.1 radical SAM family heme chaperone HemW -
  J1F19_RS09215 (J1F19_09215) - 1934801..1935787 (+) 987 WP_000784004.1 TRAP transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35940.15 Da        Isoelectric Point: 5.7980

>NTDB_id=476911 J1F19_RS09185 WP_001309723.1 1930185..1931165(-) (pilT) [Escherichia coli strain EcPNK004]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSENGVILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINIPAVGNLIREGKTHQLPHVIQTGQQVGMLTFQQSYQQR
VGEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=476911 J1F19_RS09185 WP_001309723.1 1930185..1931165(-) (pilT) [Escherichia coli strain EcPNK004]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGTATTCGCGGGCGAATGGAAGCTGCGCCGTTTGATGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAATGGTCAGCTGGATTTTGCTGTGTCGCTGGCGGAAAACCAGCGGTTGCGTGGC
AGTGCGTTCGCGCAACGGCAAGGTATTTCTCTGGCATTACGGTTGTTACCTTCGCACTGTCCACAGCTCGAACAGCTTGG
TGCGCCACCGGTATTGCCGGAATTACTCAAGAGCGAGAATGGCGTGATTCTGGTGACGGGGGCGACGGGGAGCGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTCAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTCGAA
TATCTCTATGCCAGCCAGCGATGTTTGATCCAGCAGCGGGAAATTGGTTTGCACTGTATGACGTTCGCATCGGGATTGCG
GGCTGCGTTGCGGGAAGATCCTGATGTGATTTTGCTCGGAGAGCTGCGTGACAGCGAGACAATCCGTCTGGCGCTGACGG
CGGCAGAAACCGGGCATCTGGTGCTGGCGACATTACACACGCGCGGCGCAGCGCAGGCAGTTGAGCGACTGGTGGATTCA
TTTCCGGCGCAGGAAAAAGATCCCGTGCGTAATCAACTGGCAGGGAGTTTACGGGCGGTGTTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTGCTGATTAACATTCCCGCGGTGGGGAATTTGATTCGCGAAGGGA
AAACCCACCAGTTGCCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGTTAACGTTTCAGCAGAGTTATCAGCAGCGG
GTAGGGGAAGGACGTTTGTGA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

48.93

100

0.491
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.93

100

0.491
  pilT Neisseria meningitidis 8013

48.78

100

0.491
  pilT Neisseria gonorrhoeae MS11

48.476

100

0.488
  pilT Acinetobacter baumannii D1279779

46.789

100

0.469
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Acinetobacter baumannii strain A118

46.789

100

0.469
  pilT Acinetobacter nosocomialis M2

46.789

100

0.469
  pilT Pseudomonas stutzeri DSM 10701

45.872

100

0.46
  pilT Pseudomonas aeruginosa PAK

45.566

100

0.457
  pilT Legionella pneumophila strain Lp02

44.648

100

0.448
  pilT Legionella pneumophila strain ERS1305867

44.648

100

0.448
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.824

97.546

0.408
  pilU Vibrio cholerae strain A1552

39.21

100

0.396
  pilU Pseudomonas stutzeri DSM 10701

36.97

100

0.374
  pilU Acinetobacter baylyi ADP1

36.646

98.773

0.362