Detailed information
Bioinformatically predicted
Overview
| Name | comEC | Type | Machinery gene |
| Locus tag | LLH_RS03440 | Genome accession | NC_017492 |
| Coordinates | 671289..671765 (+) | Length | 158 a.a. |
| NCBI ID | WP_014572208.1 | Uniprot ID | - |
| Organism | Lactococcus cremoris subsp. cremoris A76 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IScluster/Tn | 670206..672732 | 671289..671765 | within | 0 |
Gene organization within MGE regions
Location: 670206..672732
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLH_RS03435 (llh_3540) | - | 670206..671096 (-) | 891 | WP_014572207.1 | IS982-like element IS982B family transposase | - |
| LLH_RS03440 (llh_3545) | comEC | 671289..671765 (+) | 477 | WP_014572208.1 | MBL fold metallo-hydrolase | Machinery gene |
| LLH_RS03445 (llh_3550) | - | 671842..672732 (+) | 891 | WP_014572209.1 | IS982-like element ISLll1 family transposase | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17729.18 Da Isoelectric Point: 6.4825
>NTDB_id=47686 LLH_RS03440 WP_014572208.1 671289..671765(+) (comEC) [Lactococcus cremoris subsp. cremoris A76]
MRASITAVDIGQGDSIFLQDKFNKENILIDTGGRLALPQKNWQKAQTQSNADKTLIPYLESMGVAHIDQLILTHTDADHV
GDVLSLADRIKIREIWISPGELTNISFVEKLKKAKIPIFDSFLQVLSNGYTKKGDNNDSIVTYGNFYHTKFLFTDPNC
MRASITAVDIGQGDSIFLQDKFNKENILIDTGGRLALPQKNWQKAQTQSNADKTLIPYLESMGVAHIDQLILTHTDADHV
GDVLSLADRIKIREIWISPGELTNISFVEKLKKAKIPIFDSFLQVLSNGYTKKGDNNDSIVTYGNFYHTKFLFTDPNC
Nucleotide
Download Length: 477 bp
>NTDB_id=47686 LLH_RS03440 WP_014572208.1 671289..671765(+) (comEC) [Lactococcus cremoris subsp. cremoris A76]
ATGAGAGCAAGCATTACAGCAGTTGATATCGGACAAGGAGATAGTATTTTTCTACAAGATAAGTTTAATAAAGAAAACAT
TCTGATTGATACTGGGGGACGACTTGCTCTTCCTCAAAAAAATTGGCAAAAAGCGCAGACGCAATCAAATGCTGACAAAA
CGCTTATCCCTTATTTAGAATCCATGGGGGTGGCTCATATTGACCAACTTATTCTGACTCATACAGATGCTGACCATGTT
GGCGATGTTTTGTCCTTAGCTGATAGAATAAAAATAAGAGAAATCTGGATCAGTCCGGGAGAATTAACCAACATTAGTTT
TGTGGAAAAATTAAAAAAAGCAAAAATTCCGATTTTTGATAGTTTTCTTCAAGTTTTATCAAATGGTTACACTAAAAAAG
GGGATAATAATGATTCCATAGTGACTTATGGAAACTTTTACCATACAAAATTTCTTTTTACAGACCCGAATTGCTAG
ATGAGAGCAAGCATTACAGCAGTTGATATCGGACAAGGAGATAGTATTTTTCTACAAGATAAGTTTAATAAAGAAAACAT
TCTGATTGATACTGGGGGACGACTTGCTCTTCCTCAAAAAAATTGGCAAAAAGCGCAGACGCAATCAAATGCTGACAAAA
CGCTTATCCCTTATTTAGAATCCATGGGGGTGGCTCATATTGACCAACTTATTCTGACTCATACAGATGCTGACCATGTT
GGCGATGTTTTGTCCTTAGCTGATAGAATAAAAATAAGAGAAATCTGGATCAGTCCGGGAGAATTAACCAACATTAGTTT
TGTGGAAAAATTAAAAAAAGCAAAAATTCCGATTTTTGATAGTTTTCTTCAAGTTTTATCAAATGGTTACACTAAAAAAG
GGGATAATAATGATTCCATAGTGACTTATGGAAACTTTTACCATACAAAATTTCTTTTTACAGACCCGAATTGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEC | Lactococcus lactis subsp. cremoris KW2 |
90.909 |
100 |
0.949 |
| comEC/celB | Streptococcus mitis SK321 |
45.509 |
100 |
0.481 |
| comEC/celB | Streptococcus pneumoniae TIGR4 |
44.785 |
100 |
0.462 |
| comEC/celB | Streptococcus pneumoniae Rx1 |
43.114 |
100 |
0.456 |
| comEC/celB | Streptococcus pneumoniae D39 |
43.114 |
100 |
0.456 |
| comEC/celB | Streptococcus pneumoniae R6 |
43.114 |
100 |
0.456 |
| comEC/celB | Streptococcus mitis NCTC 12261 |
44.172 |
100 |
0.456 |
| comEC | Latilactobacillus sakei subsp. sakei 23K |
36.81 |
100 |
0.38 |