Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   G655_RS26670 Genome accession   NC_020912
Coordinates   5832382..5832906 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa B136-33     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5827382..5837906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G655_RS26655 (G655_26540) aroB 5828498..5829604 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  G655_RS26660 (G655_26545) aroK 5829654..5830172 (-) 519 WP_003095833.1 shikimate kinase AroK -
  G655_RS26665 (G655_26550) pilQ 5830184..5832328 (-) 2145 WP_015503770.1 type 4a pilus secretin PilQ Machinery gene
  G655_RS26670 (G655_26555) comL/pilP 5832382..5832906 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  G655_RS26675 (G655_26560) pilO 5832903..5833526 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  G655_RS26680 (G655_26565) pilN 5833523..5834119 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  G655_RS26685 (G655_26570) pilM 5834119..5835183 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  G655_RS26690 (G655_26575) - 5835368..5837839 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=47628 G655_RS26670 WP_003095836.1 5832382..5832906(-) (comL/pilP) [Pseudomonas aeruginosa B136-33]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=47628 G655_RS26670 WP_003095836.1 5832382..5832906(-) (comL/pilP) [Pseudomonas aeruginosa B136-33]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment