Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   JS609_RS06695 Genome accession   NZ_CP071043
Coordinates   1286606..1287742 (+) Length   378 a.a.
NCBI ID   WP_213414428.1    Uniprot ID   -
Organism   Bacillus subtilis isolate ELA2001105     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1281606..1292742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS06675 (JS609_01312) uxaA 1282055..1283548 (+) 1494 WP_213414427.1 UxaA family hydrolase -
  JS609_RS06680 (JS609_01313) yjnA 1283587..1284351 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  JS609_RS06685 (JS609_01314) bstD 1284576..1285040 (-) 465 WP_014479541.1 DinB family protein -
  JS609_RS06690 (JS609_01315) yjoB 1285189..1286460 (+) 1272 WP_003245490.1 ATPase YjoB -
  JS609_RS06695 (JS609_01316) rapC 1286606..1287742 (+) 1137 WP_213414428.1 tetratricopeptide repeat protein Regulator
  JS609_RS06700 (JS609_01317) phrA 1287732..1287866 (+) 135 WP_106073840.1 phosphatase RapA inhibitor PhrA -
  JS609_RS06705 (JS609_01318) yjpA 1287897..1288154 (-) 258 WP_003232731.1 YciI family protein -
  JS609_RS06710 (JS609_01319) xlyB 1288275..1289228 (+) 954 WP_128747067.1 N-acetylmuramoyl-L-alanine amidase -
  JS609_RS06715 (JS609_01320) yjqA 1289268..1289645 (-) 378 WP_014476529.1 PH domain-containing protein -
  JS609_RS06720 pghB 1289759..1290351 (+) 593 Protein_1262 poly-gamma-glutamate hydrolase family protein -
  JS609_RS06725 (JS609_01322) xpdC 1290428..1291264 (+) 837 WP_131227335.1 manganese catalase family protein -
  JS609_RS06730 (JS609_01323) xkdA 1291308..1291904 (-) 597 WP_213414429.1 ImmA/IrrE family metallo-endopeptidase -
  JS609_RS06735 (JS609_01324) xre 1292067..1292408 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45118.29 Da        Isoelectric Point: 4.6857

>NTDB_id=475806 JS609_RS06695 WP_213414428.1 1286606..1287742(+) (rapC) [Bacillus subtilis isolate ELA2001105]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFEEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=475806 JS609_RS06695 WP_213414428.1 1286606..1287742(+) (rapC) [Bacillus subtilis isolate ELA2001105]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGAAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCTTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

45.213

99.471

0.45
  rapF Bacillus subtilis subsp. subtilis str. 168

41.953

100

0.421