Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   BDGGKGIB_RS22025 Genome accession   NZ_CP060140
Coordinates   5283187..5283552 (+) Length   121 a.a.
NCBI ID   WP_239729100.1    Uniprot ID   -
Organism   Nodularia sphaerocarpa UHCC 0038     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5278187..5288552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGGKGIB_RS22005 (BDGGKGIB_04444) hmpF 5278573..5280306 (-) 1734 WP_239729097.1 pilus motility taxis protein HmpF -
  BDGGKGIB_RS22010 (BDGGKGIB_04445) - 5280838..5282061 (+) 1224 WP_239729098.1 response regulator -
  BDGGKGIB_RS22015 (BDGGKGIB_04446) pilH 5282217..5282582 (+) 366 WP_239729099.1 response regulator transcription factor Machinery gene
  BDGGKGIB_RS22020 (BDGGKGIB_04447) - 5282590..5282937 (+) 348 Protein_4368 chemotaxis protein CheW -
  BDGGKGIB_RS22025 (BDGGKGIB_04448) pilH 5283187..5283552 (+) 366 WP_239729100.1 response regulator transcription factor Machinery gene
  BDGGKGIB_RS22030 (BDGGKGIB_04449) - 5283560..5284090 (+) 531 WP_239729101.1 chemotaxis protein CheW -
  BDGGKGIB_RS22035 (BDGGKGIB_04450) - 5284107..5287079 (+) 2973 WP_239729102.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13462.71 Da        Isoelectric Point: 6.2212

>NTDB_id=474125 BDGGKGIB_RS22025 WP_239729100.1 5283187..5283552(+) (pilH) [Nodularia sphaerocarpa UHCC 0038]
MSTVLIVEDSIAQREMITDLLKASGLIITHAHDGVEALEAIQIAPPDLVVLDIVMPRMNGYELCRRLKSNPKTQNVPVVM
CSSKGEEFDRYWGMRQGADAYIAKPFQPTELVATVKHLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=474125 BDGGKGIB_RS22025 WP_239729100.1 5283187..5283552(+) (pilH) [Nodularia sphaerocarpa UHCC 0038]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATCGCACAACGGGAGATGATTACAGACCTCCTAAAAGCAAGTGGTTTAAT
CATCACCCATGCTCATGACGGAGTAGAAGCATTAGAGGCGATTCAAATTGCCCCTCCCGATTTAGTGGTATTGGATATTG
TGATGCCCCGGATGAACGGCTATGAACTGTGTCGTCGGTTAAAATCCAACCCAAAAACCCAAAATGTTCCCGTGGTAATG
TGTTCTTCTAAAGGTGAAGAATTTGACCGCTACTGGGGGATGAGGCAAGGTGCGGATGCTTACATAGCCAAACCGTTTCA
ACCAACCGAATTGGTGGCAACAGTCAAACACCTACTACGAGGATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

75

99.174

0.744
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  micA Streptococcus pneumoniae Cp1015

38.333

99.174

0.38
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.19

100

0.372