Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | JRY11_RS03695 | Genome accession | NZ_CP070382 |
| Coordinates | 710091..711092 (+) | Length | 333 a.a. |
| NCBI ID | WP_003131994.1 | Uniprot ID | Q9CDL3 |
| Organism | Lactococcus lactis strain KF140 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 705091..716092
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JRY11_RS03680 (JRY11_000742) | - | 706464..707159 (+) | 696 | WP_023190211.1 | hypothetical protein | - |
| JRY11_RS03685 (JRY11_000743) | hexB | 707288..709258 (+) | 1971 | WP_044009590.1 | DNA mismatch repair endonuclease MutL | Machinery gene |
| JRY11_RS03690 (JRY11_000744) | ruvA | 709371..709964 (+) | 594 | WP_003131995.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| JRY11_RS03695 (JRY11_000745) | ruvB | 710091..711092 (+) | 1002 | WP_003131994.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| JRY11_RS03700 (JRY11_000746) | - | 711229..712113 (+) | 885 | WP_023190208.1 | XRE/MutR family transcriptional regulator | - |
| JRY11_RS03705 (JRY11_000747) | - | 712333..712623 (+) | 291 | WP_023190207.1 | hypothetical protein | - |
| JRY11_RS03710 (JRY11_000748) | - | 712690..713874 (+) | 1185 | WP_014570851.1 | ABC transporter permease | - |
| JRY11_RS03715 (JRY11_000749) | - | 713871..714416 (+) | 546 | WP_248554355.1 | AAA family ATPase | - |
| JRY11_RS03720 (JRY11_000750) | - | 714593..714757 (+) | 165 | WP_003131988.1 | hypothetical protein | - |
| JRY11_RS03725 (JRY11_000751) | - | 714901..715338 (+) | 438 | WP_010906378.1 | low molecular weight protein-tyrosine-phosphatase | - |
| JRY11_RS03730 (JRY11_000752) | - | 715439..715804 (+) | 366 | WP_003131985.1 | MerR family transcriptional regulator | - |
Sequence
Protein
Download Length: 333 a.a. Molecular weight: 37633.17 Da Isoelectric Point: 4.5825
>NTDB_id=474125 JRY11_RS03695 WP_003131994.1 710091..711092(+) (ruvB) [Lactococcus lactis strain KF140]
MNDILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGLGKTTMAFVIANELGVNI
KQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVLYSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGISSHMEYYQERDLEEIVKRTADIFEVEVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVD
KAITDKALSILDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLIQKGFLMRTKQGRKVTQR
AYEHLGYVYNEED
MNDILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGLGKTTMAFVIANELGVNI
KQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVLYSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGISSHMEYYQERDLEEIVKRTADIFEVEVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVD
KAITDKALSILDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLIQKGFLMRTKQGRKVTQR
AYEHLGYVYNEED
Nucleotide
Download Length: 1002 bp
>NTDB_id=474125 JRY11_RS03695 WP_003131994.1 710091..711092(+) (ruvB) [Lactococcus lactis strain KF140]
ATGAACGATATATTAAACAAAGAGCCAATGGAAGAAGATTACGGTATTGAAAAATCTCTACGTCCGCAATTTTTTAATCA
ATATATTGGTCAAGATAAAGTCAAAGAACAATTAGAAATCTTTATTAAAGCAGCAAAAATGCGTGAAGAAGTTTTGGACC
ACGTGTTACTTTTTGGCCCTCCGGGACTTGGTAAGACAACAATGGCATTTGTCATTGCCAATGAGTTGGGGGTTAATATT
AAACAAACAGCGGGTCCTGCCATTGAAAAGCCAGGAGATTTAGTTGCGATTTTGAATGAATTGGAACCTGGCGATGTGCT
ATTTATTGATGAAATTCATCGGATGCCAATGCAAGTTGAAGAAGTTCTTTATAGCGCTATGGAAGATTTCTACATTGATA
TTATGCTTGGTTCTGGTGATGGTTCACGCTCGGTTCATTTAGATTTGCCGCCATTTACTCTAGTTGGGGCAACAACAAGA
GCTGGAATGCTTTCGAATCCATTGCGTGCCCGTTTTGGAATTTCAAGTCATATGGAGTATTATCAAGAGCGTGATTTGGA
AGAAATTGTTAAAAGAACAGCTGATATTTTTGAAGTCGAAGTTATTGATAATGCCGCTTTAGAGATTGCTTTACGTAGTC
GAGGGACTCCGCGGATTGCCAATCGTTTACTTAAACGAGTGCGTGATTTTGCTCAAATAATGGGGGATGGCCGAGTGGAT
AAAGCAATTACCGATAAGGCCTTGTCTATTCTTGATGTTGATGCCGCTGGTTTGGACTATATTGACCAAAAAATTCTCCG
CACAATGATTGAAATGTACCACGGTGGTCCTGTTGGGATTGGAACTTTGGCGGTAAACATTGCCGAAGACCGTGAAACGG
TCGAGGATATGTATGAACCTTATTTGATTCAAAAAGGATTTTTGATGAGAACTAAACAGGGACGTAAGGTGACCCAAAGA
GCCTATGAACACCTAGGTTATGTTTACAATGAAGAAGATTGA
ATGAACGATATATTAAACAAAGAGCCAATGGAAGAAGATTACGGTATTGAAAAATCTCTACGTCCGCAATTTTTTAATCA
ATATATTGGTCAAGATAAAGTCAAAGAACAATTAGAAATCTTTATTAAAGCAGCAAAAATGCGTGAAGAAGTTTTGGACC
ACGTGTTACTTTTTGGCCCTCCGGGACTTGGTAAGACAACAATGGCATTTGTCATTGCCAATGAGTTGGGGGTTAATATT
AAACAAACAGCGGGTCCTGCCATTGAAAAGCCAGGAGATTTAGTTGCGATTTTGAATGAATTGGAACCTGGCGATGTGCT
ATTTATTGATGAAATTCATCGGATGCCAATGCAAGTTGAAGAAGTTCTTTATAGCGCTATGGAAGATTTCTACATTGATA
TTATGCTTGGTTCTGGTGATGGTTCACGCTCGGTTCATTTAGATTTGCCGCCATTTACTCTAGTTGGGGCAACAACAAGA
GCTGGAATGCTTTCGAATCCATTGCGTGCCCGTTTTGGAATTTCAAGTCATATGGAGTATTATCAAGAGCGTGATTTGGA
AGAAATTGTTAAAAGAACAGCTGATATTTTTGAAGTCGAAGTTATTGATAATGCCGCTTTAGAGATTGCTTTACGTAGTC
GAGGGACTCCGCGGATTGCCAATCGTTTACTTAAACGAGTGCGTGATTTTGCTCAAATAATGGGGGATGGCCGAGTGGAT
AAAGCAATTACCGATAAGGCCTTGTCTATTCTTGATGTTGATGCCGCTGGTTTGGACTATATTGACCAAAAAATTCTCCG
CACAATGATTGAAATGTACCACGGTGGTCCTGTTGGGATTGGAACTTTGGCGGTAAACATTGCCGAAGACCGTGAAACGG
TCGAGGATATGTATGAACCTTATTTGATTCAAAAAGGATTTTTGATGAGAACTAAACAGGGACGTAAGGTGACCCAAAGA
GCCTATGAACACCTAGGTTATGTTTACAATGAAGAAGATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Streptococcus pneumoniae R6 |
78.614 |
99.7 |
0.784 |
| ruvB | Streptococcus pneumoniae D39 |
78.614 |
99.7 |
0.784 |
| ruvB | Streptococcus pneumoniae TIGR4 |
78.313 |
99.7 |
0.781 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
61.491 |
96.697 |
0.595 |
| ruvB | Helicobacter pylori 26695 |
51.242 |
96.697 |
0.495 |
| ruvB | Synechocystis sp. PCC 6803 |
51.613 |
93.093 |
0.48 |