Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   BDGGKGIB_RS22015 Genome accession   NZ_CP060140
Coordinates   5282217..5282582 (+) Length   121 a.a.
NCBI ID   WP_239729099.1    Uniprot ID   -
Organism   Nodularia sphaerocarpa UHCC 0038     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5277217..5287582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGGKGIB_RS22000 (BDGGKGIB_04443) tilS 5277558..5278553 (+) 996 WP_239729096.1 tRNA lysidine(34) synthetase TilS -
  BDGGKGIB_RS22005 (BDGGKGIB_04444) hmpF 5278573..5280306 (-) 1734 WP_239729097.1 pilus motility taxis protein HmpF -
  BDGGKGIB_RS22010 (BDGGKGIB_04445) - 5280838..5282061 (+) 1224 WP_239729098.1 response regulator -
  BDGGKGIB_RS22015 (BDGGKGIB_04446) pilH 5282217..5282582 (+) 366 WP_239729099.1 response regulator transcription factor Machinery gene
  BDGGKGIB_RS22020 (BDGGKGIB_04447) - 5282590..5282937 (+) 348 Protein_4368 chemotaxis protein CheW -
  BDGGKGIB_RS22025 (BDGGKGIB_04448) pilH 5283187..5283552 (+) 366 WP_239729100.1 response regulator transcription factor Machinery gene
  BDGGKGIB_RS22030 (BDGGKGIB_04449) - 5283560..5284090 (+) 531 WP_239729101.1 chemotaxis protein CheW -
  BDGGKGIB_RS22035 (BDGGKGIB_04450) - 5284107..5287079 (+) 2973 WP_239729102.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13394.47 Da        Isoelectric Point: 4.6651

>NTDB_id=474124 BDGGKGIB_RS22015 WP_239729099.1 5282217..5282582(+) (pilH) [Nodularia sphaerocarpa UHCC 0038]
MSTVLIVEDSMAQREMMTDLLEASGLTVTHANDGLEALAAIETSPPDLVILDIVMPRMNGYELCRRLKSHPKTQNVPVVI
CSGNSQEFDRYWGMKQGADAYIGKPFQETELVGIVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=474124 BDGGKGIB_RS22015 WP_239729099.1 5282217..5282582(+) (pilH) [Nodularia sphaerocarpa UHCC 0038]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATGGCACAACGGGAGATGATGACAGACCTCCTAGAAGCAAGTGGTTTAAC
AGTAACCCATGCCAATGACGGATTAGAAGCATTGGCAGCAATTGAAACTTCCCCTCCCGATTTAGTGATCTTGGATATTG
TGATGCCCCGGATGAACGGCTATGAATTGTGTCGGCGGTTAAAATCCCACCCCAAAACCCAAAACGTCCCCGTGGTGATC
TGTTCTGGTAACAGCCAAGAATTTGATCGCTACTGGGGAATGAAGCAAGGTGCAGATGCTTACATAGGCAAACCGTTTCA
AGAAACCGAATTGGTGGGAATAGTCAAACAACTGCTCAGAGGATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

65

99.174

0.645
  pilL-C Synechocystis sp. PCC 6803

37.705

100

0.38
  vicR Streptococcus mutans UA159

36.667

99.174

0.364
  micA Streptococcus pneumoniae Cp1015

36.667

99.174

0.364
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364