Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GWQ54_RS08610 Genome accession   NZ_CP070373
Coordinates   1893650..1895266 (+) Length   538 a.a.
NCBI ID   WP_189764104.1    Uniprot ID   -
Organism   Streptomyces sp. MBT27     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1888650..1900266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWQ54_RS08580 lepB 1888972..1890183 (+) 1212 WP_161245009.1 signal peptidase I -
  GWQ54_RS08585 lepB 1890125..1890982 (+) 858 WP_159030417.1 signal peptidase I -
  GWQ54_RS08590 lepB 1891087..1891827 (+) 741 WP_167156549.1 signal peptidase I -
  GWQ54_RS08595 - 1891833..1892318 (+) 486 WP_167156546.1 NUDIX hydrolase -
  GWQ54_RS08600 - 1892374..1892682 (+) 309 WP_003965949.1 DUF2469 domain-containing protein -
  GWQ54_RS08605 - 1893271..1893648 (+) 378 WP_167156544.1 YraN family protein -
  GWQ54_RS08610 comM 1893650..1895266 (+) 1617 WP_189764104.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GWQ54_RS08615 dprA 1895740..1896873 (+) 1134 WP_167159483.1 DNA-processing protein DprA -
  GWQ54_RS08620 whiG 1897117..1897959 (+) 843 WP_167156542.1 RNA polymerase sigma factor WhiG -
  GWQ54_RS08625 - 1898043..1898600 (+) 558 WP_167159481.1 TetR/AcrR family transcriptional regulator -
  GWQ54_RS08630 - 1898662..1899147 (-) 486 WP_167156540.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 55763.12 Da        Isoelectric Point: 6.4450

>NTDB_id=474042 GWQ54_RS08610 WP_189764104.1 1893650..1895266(+) (comM) [Streptomyces sp. MBT27]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLAESRDRVRAAVVNSGDAWPQKKLTVGLSPASVPKSGAG
FDLAIACAILGAAERIDPRELTDLVMIGELGLDGRVRPVRGILPAVLAAAEAGYEQVVVPEQTAAEASLVPGISVLGVRS
LRQLVAVLTDEPVPDEEPAEKGRPDAILAGLVVPGAGAGTGLAAGPRDADLDLIDVAGQHAARAALEIAAAGGHHLLLSG
PPGAGKTMLAERLPGILPPLTRQESLEVTAVHSVAGILPPGEPLVRRAPYCAPHHSATMQSLVGGGNGLPRPGAVSIAHR
GVLFLDEAPEFAGKALDALRQPLESGHVVIARSAGVIRLPARFQMILAANPCPCGRHTLHGAGCECPASMIRRYQARLSG
PLLDRVDLRVEVEPVRREDLLGGGGRGEPSAVVAARVLAARERTAARLEDTPWSNNSEVPGHELRTRWLTAPGALTGAER
DMERGLLTARGLDRVLRVAWTIADLAGHDRPDANHVALALELRTGISRGAPMPAGVTL

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=474042 GWQ54_RS08610 WP_189764104.1 1893650..1895266(+) (comM) [Streptomyces sp. MBT27]
ATGGGATTCGCACGCACCTGCTCGGTCGCCCTCGTCGGCGTCGAAGGAGTCGTCGTCGAGGTCCAGGCCGACCTCGAACC
CGGCGTCGCCGCCTTCACCCTCGTCGGCCTCCCCGACAAGAGCCTCGCGGAAAGCCGCGACCGCGTGCGGGCCGCCGTCG
TCAACTCCGGCGACGCCTGGCCCCAGAAGAAGCTCACCGTCGGCCTCAGCCCCGCGTCCGTCCCCAAGAGCGGCGCCGGC
TTCGACCTCGCCATCGCCTGCGCGATCCTCGGGGCGGCCGAACGCATCGACCCCCGCGAACTGACCGACCTCGTCATGAT
CGGCGAGCTCGGCCTCGACGGACGCGTACGCCCCGTCCGAGGCATCCTGCCCGCCGTCCTCGCCGCCGCCGAAGCCGGCT
ACGAACAAGTCGTCGTCCCCGAACAGACCGCCGCCGAAGCGTCCCTCGTCCCCGGCATCTCCGTCCTCGGCGTACGCAGC
CTGCGCCAACTCGTCGCCGTCCTCACCGACGAGCCCGTCCCCGACGAAGAACCCGCCGAAAAGGGCCGCCCCGACGCGAT
ACTGGCCGGACTCGTCGTACCCGGCGCCGGGGCGGGCACCGGCCTCGCCGCCGGCCCACGCGACGCCGACCTCGACCTCA
TCGACGTCGCGGGCCAGCACGCCGCCCGCGCCGCCCTCGAAATCGCCGCCGCAGGCGGTCACCACCTGCTGCTGTCCGGC
CCCCCGGGAGCCGGCAAAACCATGCTCGCCGAACGGCTCCCCGGCATCCTGCCGCCCCTCACCCGCCAGGAATCCCTCGA
AGTCACCGCCGTCCACTCCGTCGCCGGAATCCTCCCGCCCGGCGAACCCCTCGTCCGCCGCGCCCCCTACTGCGCCCCCC
ACCACTCCGCCACCATGCAGTCCCTCGTCGGCGGCGGCAACGGCCTACCGCGCCCCGGCGCCGTATCCATCGCCCACCGA
GGAGTCCTCTTCCTCGACGAAGCCCCCGAATTCGCCGGCAAAGCCCTCGACGCCCTCCGCCAGCCCCTCGAATCCGGCCA
CGTCGTCATCGCCCGCAGCGCCGGAGTCATCAGGCTCCCCGCCCGATTCCAGATGATCCTCGCCGCCAACCCCTGCCCCT
GCGGCCGCCACACCCTGCACGGCGCGGGCTGCGAATGCCCCGCCTCCATGATCCGCCGCTACCAGGCCAGGCTCTCCGGC
CCCCTCCTGGACCGCGTCGACCTCCGCGTAGAAGTCGAACCCGTACGCCGCGAAGACCTCCTCGGCGGAGGCGGCCGCGG
CGAACCCAGCGCCGTCGTCGCAGCCCGTGTCCTCGCCGCCCGCGAACGCACGGCGGCCCGCCTCGAGGACACCCCCTGGA
GCAACAACAGCGAAGTCCCCGGCCACGAACTGCGCACCCGCTGGCTCACCGCCCCCGGCGCCCTCACCGGCGCCGAACGC
GACATGGAACGCGGCCTGCTCACCGCCCGCGGGCTCGACCGGGTCCTGCGCGTCGCCTGGACCATCGCCGACCTTGCCGG
ACACGACCGCCCCGACGCGAACCACGTGGCCCTCGCCCTGGAACTGCGCACCGGCATCTCCCGAGGCGCCCCCATGCCGG
CAGGAGTGACCCTGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(427-523)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(212-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

41.143

97.584

0.401
  comM Acinetobacter baylyi ADP1

40.189

98.513

0.396
  comM Vibrio campbellii strain DS40M4

40.341

98.141

0.396
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.228

97.955

0.394
  comM Vibrio cholerae strain A1552

40.228

97.955

0.394
  comM Glaesserella parasuis strain SC1401

39.924

97.77

0.39
  comM Legionella pneumophila strain ERS1305867

38.722

98.885

0.383
  comM Legionella pneumophila str. Paris

38.722

98.885

0.383
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

37.67

95.725

0.361