Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   H5405_RS00125 Genome accession   NZ_CP060085
Coordinates   23797..24315 (+) Length   172 a.a.
NCBI ID   WP_007615071.1    Uniprot ID   -
Organism   Bacillus velezensis strain HAB-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 18797..29315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS00105 (H5405_00105) - 19875..20081 (+) 207 WP_007615075.1 DUF951 domain-containing protein -
  H5405_RS00110 (H5405_00110) - 20128..22131 (+) 2004 WP_007615074.1 molybdopterin-dependent oxidoreductase -
  H5405_RS00115 (H5405_00115) ychF 22258..23358 (+) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  H5405_RS00120 (H5405_00120) rpsF 23470..23757 (+) 288 WP_004392977.1 30S ribosomal protein S6 -
  H5405_RS00125 (H5405_00125) ssbA 23797..24315 (+) 519 WP_007615071.1 single-stranded DNA-binding protein SsbA Machinery gene
  H5405_RS00130 (H5405_00130) rpsR 24359..24598 (+) 240 WP_029325793.1 30S ribosomal protein S18 -
  H5405_RS00135 (H5405_00135) - 24787..25368 (+) 582 WP_007615067.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  H5405_RS00140 (H5405_00140) - 25365..25922 (+) 558 WP_007615065.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  H5405_RS00145 (H5405_00145) xth 25919..26677 (+) 759 WP_007615064.1 exodeoxyribonuclease III -
  H5405_RS00150 (H5405_00150) - 26740..27678 (+) 939 WP_029325792.1 LacI family DNA-binding transcriptional regulator -
  H5405_RS00155 (H5405_00155) - 27734..28114 (+) 381 WP_007615062.1 VOC family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18772.33 Da        Isoelectric Point: 4.7621

>NTDB_id=473764 H5405_RS00125 WP_007615071.1 23797..24315(+) (ssbA) [Bacillus velezensis strain HAB-2]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNNGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=473764 H5405_RS00125 WP_007615071.1 23797..24315(+) (ssbA) [Bacillus velezensis strain HAB-2]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAACGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

34.973

100

0.372