Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   H0H24_RS14865 Genome accession   NZ_CP059729
Coordinates   3161358..3161831 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain AbCTX13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3156358..3166831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0H24_RS14840 (H0H24_14820) - 3156822..3158927 (-) 2106 WP_001117589.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  H0H24_RS14845 (H0H24_14825) - 3158967..3159096 (-) 130 Protein_2934 hypothetical protein -
  H0H24_RS14850 (H0H24_14830) rpoZ 3159135..3159413 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H0H24_RS14855 (H0H24_14835) gmk 3159486..3160115 (-) 630 WP_000015937.1 guanylate kinase -
  H0H24_RS14860 (H0H24_14840) ispH 3160238..3161188 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H0H24_RS14865 (H0H24_14845) fimU 3161358..3161831 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H0H24_RS14870 (H0H24_14850) pilV 3161825..3162385 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  H0H24_RS14875 (H0H24_14855) pilW 3162386..3163387 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  H0H24_RS14880 (H0H24_14860) pilX 3163384..3164202 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=471610 H0H24_RS14865 WP_001214065.1 3161358..3161831(+) (fimU) [Acinetobacter baumannii strain AbCTX13]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=471610 H0H24_RS14865 WP_001214065.1 3161358..3161831(+) (fimU) [Acinetobacter baumannii strain AbCTX13]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1