Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HP2018_RS00215 | Genome accession | NC_017381 |
| Coordinates | 39377..40507 (+) | Length | 376 a.a. |
| NCBI ID | WP_001045760.1 | Uniprot ID | - |
| Organism | Helicobacter pylori 2018 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 34377..45507
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HP2018_RS00180 (hp2018_0038) | panD | 34804..35157 (+) | 354 | WP_000142275.1 | aspartate 1-decarboxylase | - |
| HP2018_RS00185 (hp2018_0039) | - | 35160..35462 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HP2018_RS00190 (hp2018_0040) | - | 35462..36466 (+) | 1005 | WP_000965841.1 | PDZ domain-containing protein | - |
| HP2018_RS00195 (hp2018_0041) | comB6 | 36474..37529 (+) | 1056 | WP_000679715.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HP2018_RS00200 (hp2018_0042) | comB7 | 37545..37658 (+) | 114 | WP_001217877.1 | hypothetical protein | Machinery gene |
| HP2018_RS00205 (hp2018_0043) | comB8 | 37655..38398 (+) | 744 | WP_000660538.1 | type IV secretion system protein | Machinery gene |
| HP2018_RS00210 (hp2018_0044) | comB9 | 38398..39384 (+) | 987 | WP_014536255.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HP2018_RS00215 (hp2018_0045) | comB10 | 39377..40507 (+) | 1131 | WP_001045760.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HP2018_RS00220 (hp2018_0046) | - | 40577..41989 (+) | 1413 | WP_000694991.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HP2018_RS00225 (hp2018_0047) | gmd | 42030..43175 (+) | 1146 | WP_000659866.1 | GDP-mannose 4,6-dehydratase | - |
| HP2018_RS00230 (hp2018_0048) | - | 43168..44100 (+) | 933 | WP_001002465.1 | GDP-L-fucose synthase family protein | - |
| HP2018_RS08395 | - | 44128..44306 (-) | 179 | Protein_40 | anthranilate synthase component I | - |
| HP2018_RS08400 (hp2018_0050) | - | 44484..44771 (-) | 288 | WP_000466442.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41955.50 Da Isoelectric Point: 9.7473
>NTDB_id=47085 HP2018_RS00215 WP_001045760.1 39377..40507(+) (comB10) [Helicobacter pylori 2018]
MNKWIKGAVVFVGGFATIMTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWIKGAVVFVGGFATIMTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1131 bp
>NTDB_id=47085 HP2018_RS00215 WP_001045760.1 39377..40507(+) (comB10) [Helicobacter pylori 2018]
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTATGACCATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCTCTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCTAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAGGCCTTAAATTCCAAAGAAATGAATTATTCCAAAGAAGAGACTTTTACTAGCCCTCCCATGGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGAAAGGCTGTTTTGATCCCTA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGCATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTACAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATTAATCAAGTCGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGATATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCAGAGT
TTTTGAAGTGA
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTATGACCATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCTCTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCTAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAGGCCTTAAATTCCAAAGAAATGAATTATTCCAAAGAAGAGACTTTTACTAGCCCTCCCATGGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGAAAGGCTGTTTTGATCCCTA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGCATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTACAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATTAATCAAGTCGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGATATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCAGAGT
TTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.277 |
100 |
0.963 |