Detailed information NTG0047081

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HP2018_RS00195
• Genome accession: NC_017381
• Coordinates: 36474..37529 (+)
• Length: 351 a.a.
• NCBI ID: WP_000679715.1
• Uniprot ID: -
• Organism: Helicobacter pylori 2018
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31474..42529

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HP2018_RS00165 (hp2018_0035)	-	31896..32309 (+)	414	WP_001023005.1	universal stress protein	-
HP2018_RS00170 (hp2018_0036)	-	32311..32586 (+)	276	WP_000781793.1	ATP-dependent Clp protease adaptor ClpS	-
HP2018_RS00175 (hp2018_0037)	-	32586..34814 (+)	2229	WP_000357218.1	AAA family ATPase	-
HP2018_RS00180 (hp2018_0038)	panD	34804..35157 (+)	354	WP_000142275.1	aspartate 1-decarboxylase	-
HP2018_RS00185 (hp2018_0039)	-	35160..35462 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HP2018_RS00190 (hp2018_0040)	-	35462..36466 (+)	1005	WP_000965841.1	PDZ domain-containing protein	-
HP2018_RS00195 (hp2018_0041)	comB6	36474..37529 (+)	1056	WP_000679715.1	P-type conjugative transfer protein TrbL	Machinery gene
HP2018_RS00200 (hp2018_0042)	comB7	37545..37658 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
HP2018_RS00205 (hp2018_0043)	comB8	37655..38398 (+)	744	WP_000660538.1	type IV secretion system protein	Machinery gene
HP2018_RS00210 (hp2018_0044)	comB9	38398..39384 (+)	987	WP_014536255.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HP2018_RS00215 (hp2018_0045)	comB10	39377..40507 (+)	1131	WP_001045760.1	DNA type IV secretion system protein ComB10	Machinery gene
HP2018_RS00220 (hp2018_0046)	-	40577..41989 (+)	1413	WP_000694991.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39645.53 Da
• Isoelectric Point: 8.8283

>NTDB_id=47081 HP2018_RS00195 WP_000679715.1 36474..37529(+) (comB6) [Helicobacter pylori 2018]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKEQNFFSASALLEALWFVGFFALFNH
ALKNPSRFYELFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLTQSALQSLQYTTTSPAPSPISTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTIDTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=47081 HP2018_RS00195 WP_000679715.1 36474..37529(+) (comB6) [Helicobacter pylori 2018]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGCTTTTTGCTTACAGGAGTT
TGAAAGAGCAGAATTTTTTCAGCGCTAGCGCGCTTTTAGAGGCGTTATGGTTTGTGGGGTTTTTCGCACTGTTTAACCAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATCTTTATTGCACCTAACATGATCGCACAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCACTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGCT
TCATCAGCGATTTGAGTCATAACGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTTAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCCTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCACTCAAAGCGCTTTGCAATCTTTACAATATACCA
CAACCTCGCCCGCTCCCTCTCCTATTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAGATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	92.308	100	0.923