Detailed information NTG0047084

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HP2018_RS00210
• Genome accession: NC_017381
• Coordinates: 38398..39384 (+)
• Length: 328 a.a.
• NCBI ID: WP_014536255.1
• Uniprot ID: -
• Organism: Helicobacter pylori 2018
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33398..44384

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HP2018_RS00180 (hp2018_0038)	panD	34804..35157 (+)	354	WP_000142275.1	aspartate 1-decarboxylase	-
HP2018_RS00185 (hp2018_0039)	-	35160..35462 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HP2018_RS00190 (hp2018_0040)	-	35462..36466 (+)	1005	WP_000965841.1	PDZ domain-containing protein	-
HP2018_RS00195 (hp2018_0041)	comB6	36474..37529 (+)	1056	WP_000679715.1	P-type conjugative transfer protein TrbL	Machinery gene
HP2018_RS00200 (hp2018_0042)	comB7	37545..37658 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
HP2018_RS00205 (hp2018_0043)	comB8	37655..38398 (+)	744	WP_000660538.1	type IV secretion system protein	Machinery gene
HP2018_RS00210 (hp2018_0044)	comB9	38398..39384 (+)	987	WP_014536255.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HP2018_RS00215 (hp2018_0045)	comB10	39377..40507 (+)	1131	WP_001045760.1	DNA type IV secretion system protein ComB10	Machinery gene
HP2018_RS00220 (hp2018_0046)	-	40577..41989 (+)	1413	WP_000694991.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HP2018_RS00225 (hp2018_0047)	gmd	42030..43175 (+)	1146	WP_000659866.1	GDP-mannose 4,6-dehydratase	-
HP2018_RS00230 (hp2018_0048)	-	43168..44100 (+)	933	WP_001002465.1	GDP-L-fucose synthase family protein	-
HP2018_RS08395	-	44128..44306 (-)	179	Protein_40	anthranilate synthase component I	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37942.77 Da
• Isoelectric Point: 9.6350

>NTDB_id=47084 HP2018_RS00210 WP_014536255.1 38398..39384(+) (comB9) [Helicobacter pylori 2018]
MRKVLYALMGFLLAFSVLKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENQENMAENAPKDAQKNNKPLKEEKEETKEKEEETIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWYCL
WACSKKSKLSLMPKEIFNDKQFTYFKFDKRLVLSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIR
FVKRSKGE

Nucleotide

• Length: 987 bp

>NTDB_id=47084 HP2018_RS00210 WP_014536255.1 38398..39384(+) (comB9) [Helicobacter pylori 2018]
ATGCGTAAGGTTTTATACGCTCTCATGGGTTTTTTGTTGGCTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTATTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTGGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
CAACGATCGCATTTTACTCATCAAGCCTTTACAAATCGGCGTGGATTCTAATATCAGCGTGATTGATAGCGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATCAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCAAAA
AAATAATAAGCCCCTAAAAGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAGACTATAATTATTGGCGATAACACCA
ACGCGATGAAAATTATTAAAAAAGACATCCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTA
TGGGCTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATT
TGACAAAAGATTAGTGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAATCCGGTGAATACAAGGA
TTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGATTATCTGTGTATCCGT
TTTGTCAAAAGGAGCAAAGGTGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-319)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.683	100	0.927