Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HP2018_RS00200 | Genome accession | NC_017381 |
| Coordinates | 37545..37658 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217877.1 | Uniprot ID | A0A1A9H2U2 |
| Organism | Helicobacter pylori 2018 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 32545..42658
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HP2018_RS00175 (hp2018_0037) | - | 32586..34814 (+) | 2229 | WP_000357218.1 | AAA family ATPase | - |
| HP2018_RS00180 (hp2018_0038) | panD | 34804..35157 (+) | 354 | WP_000142275.1 | aspartate 1-decarboxylase | - |
| HP2018_RS00185 (hp2018_0039) | - | 35160..35462 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HP2018_RS00190 (hp2018_0040) | - | 35462..36466 (+) | 1005 | WP_000965841.1 | PDZ domain-containing protein | - |
| HP2018_RS00195 (hp2018_0041) | comB6 | 36474..37529 (+) | 1056 | WP_000679715.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HP2018_RS00200 (hp2018_0042) | comB7 | 37545..37658 (+) | 114 | WP_001217877.1 | hypothetical protein | Machinery gene |
| HP2018_RS00205 (hp2018_0043) | comB8 | 37655..38398 (+) | 744 | WP_000660538.1 | type IV secretion system protein | Machinery gene |
| HP2018_RS00210 (hp2018_0044) | comB9 | 38398..39384 (+) | 987 | WP_014536255.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HP2018_RS00215 (hp2018_0045) | comB10 | 39377..40507 (+) | 1131 | WP_001045760.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HP2018_RS00220 (hp2018_0046) | - | 40577..41989 (+) | 1413 | WP_000694991.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4291.23 Da Isoelectric Point: 9.3572
>NTDB_id=47082 HP2018_RS00200 WP_001217877.1 37545..37658(+) (comB7) [Helicobacter pylori 2018]
MRIFFVIMGLVLFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVLFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=47082 HP2018_RS00200 WP_001217877.1 37545..37658(+) (comB7) [Helicobacter pylori 2018]
ATGAGGATTTTTTTTGTTATTATGGGACTTGTGCTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAGAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGGATTTTTTTTGTTATTATGGGACTTGTGCTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAGAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
97.297 |
100 |
0.973 |