Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H3L92_RS10040 Genome accession   NZ_CP059570
Coordinates   2147152..2147448 (-) Length   98 a.a.
NCBI ID   WP_085366140.1    Uniprot ID   A0A1X3D810
Organism   Neisseria dentiae strain DSM 19151     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2142152..2152448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L92_RS13395 - 2142177..2142395 (-) 219 WP_245945428.1 hypothetical protein -
  H3L92_RS13650 - 2142466..2143380 (-) 915 Protein_2002 ESPR-type extended signal peptide-containing protein -
  H3L92_RS10020 (H3L92_10020) - 2143861..2144735 (-) 875 Protein_2003 IS5 family transposase -
  H3L92_RS10025 (H3L92_10025) - 2145018..2145431 (-) 414 Protein_2004 IS1595 family transposase -
  H3L92_RS13655 (H3L92_10030) - 2145692..2145793 (+) 102 WP_115336223.1 hypothetical protein -
  H3L92_RS10035 (H3L92_10035) - 2146704..2147114 (+) 411 WP_245945429.1 hypothetical protein -
  H3L92_RS10040 (H3L92_10040) comE 2147152..2147448 (-) 297 WP_085366140.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 9959.70 Da        Isoelectric Point: 10.4815

>NTDB_id=470841 H3L92_RS10040 WP_085366140.1 2147152..2147448(-) (comE) [Neisseria dentiae strain DSM 19151]
MKHYLFGALAALAAPLLLAAVNINTATAEELKALPGIGPSKAAAIVAYREQNGPFKSVDDLQNVKGIGAGILAKLREEAT
VGAGAAKKAQPAVKKPAK

Nucleotide


Download         Length: 297 bp        

>NTDB_id=470841 H3L92_RS10040 WP_085366140.1 2147152..2147448(-) (comE) [Neisseria dentiae strain DSM 19151]
CTGAAACATTATCTCTTCGGTGCCCTGGCGGCACTGGCGGCACCGCTGCTGCTGGCGGCGGTGAACATCAACACCGCGAC
GGCGGAGGAGCTGAAGGCGCTGCCGGGGATAGGGCCGTCGAAGGCGGCGGCGATCGTGGCGTACCGTGAGCAGAACGGGC
CGTTCAAGAGCGTGGACGATTTGCAGAACGTGAAGGGGATAGGCGCGGGGATACTGGCGAAGCTGCGTGAGGAGGCGACG
GTGGGGGCCGGGGCGGCGAAGAAGGCGCAGCCCGCGGTGAAAAAACCGGCTAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X3D810

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

61.053

96.939

0.592
  comE Neisseria gonorrhoeae MS11

61.053

96.939

0.592
  comE Neisseria gonorrhoeae MS11

61.053

96.939

0.592
  comE Neisseria gonorrhoeae MS11

61.053

96.939

0.592
  comEA Vibrio parahaemolyticus RIMD 2210633

47.727

89.796

0.429
  comEA Vibrio cholerae C6706

56.944

73.469

0.418
  comEA Vibrio cholerae strain A1552

56.944

73.469

0.418
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

79.592

0.398