Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H3L92_RS01495 Genome accession   NZ_CP059570
Coordinates   322006..323496 (-) Length   496 a.a.
NCBI ID   WP_085365082.1    Uniprot ID   A0A1X3DFT2
Organism   Neisseria dentiae strain DSM 19151     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 317006..328496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L92_RS01470 (H3L92_01470) - 317739..318473 (+) 735 WP_085365087.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  H3L92_RS01475 (H3L92_01475) - 318496..319179 (+) 684 WP_085365086.1 M48 family metallopeptidase -
  H3L92_RS01480 (H3L92_01480) - 319344..320171 (-) 828 WP_085365085.1 undecaprenyl-diphosphate phosphatase -
  H3L92_RS01485 (H3L92_01485) dsbA1 320363..321064 (-) 702 WP_085365084.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  H3L92_RS01490 (H3L92_01490) - 321084..321893 (-) 810 WP_085365083.1 SPOR domain-containing protein -
  H3L92_RS01495 (H3L92_01495) comM 322006..323496 (-) 1491 WP_085365082.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H3L92_RS01500 (H3L92_01500) - 323523..323798 (-) 276 WP_085365081.1 accessory factor UbiK family protein -
  H3L92_RS01505 (H3L92_01505) - 324184..324651 (-) 468 WP_085365080.1 low molecular weight protein-tyrosine-phosphatase -
  H3L92_RS01510 (H3L92_01510) - 324648..325739 (-) 1092 WP_085365079.1 conjugal transfer protein -
  H3L92_RS01515 (H3L92_01515) - 325898..326674 (-) 777 WP_085365078.1 ADP-ribosylglycohydrolase family protein -
  H3L92_RS01520 (H3L92_01520) msrAB 326880..328433 (-) 1554 WP_085365149.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52970.81 Da        Isoelectric Point: 7.6373

>NTDB_id=470818 H3L92_RS01495 WP_085365082.1 322006..323496(-) (comM) [Neisseria dentiae strain DSM 19151]
MSLALVYSRALSGMNAPLVEVEAHLANGLPAFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQVMADKLAQYEFAGELALSGALRPVRGALAMAWQGMKAGRAFILPQQNAEQAAIINGITVYGAGSL
GQVAAHLNAVEPLAQTQADMAQRPSENRSLHDLKDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLAQRLPSILPPL
TDEELIEVWALRSLLPNHRQDLHGQRPFQSPHHTSSPVAVVGGNAGPGEISLAHNGILFLDELPEFDRKVLEVLREPLET
GEIHISRAAHKAVYPAGFQLVAAMNPCPCGYLGHPAKPCRCTPESIARYRGKISGPLLDRIDLTIEVPALSAAELAQQQA
GESSADVSARVRAARERQYARQGKVNAALSVTELDETAMVSKEAHETLGGLLEKLSLSARSYHRIMRVARTLADLGGDEG
VSRAHVLRAVSFRRAL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=470818 H3L92_RS01495 WP_085365082.1 322006..323496(-) (comM) [Neisseria dentiae strain DSM 19151]
ATGTCGTTAGCCCTTGTTTACAGCCGCGCCTTAAGCGGCATGAACGCGCCGTTGGTGGAGGTGGAAGCCCATCTTGCCAA
CGGCTTGCCCGCGTTTAATATCGTCGGCCTGCCCGACACCGAAGTCAAAGAAAGCCGCGACCGCGTGCGCGCGGCGATTA
TCCAGAGCGGCTTTGAATTTCCCGCCAAAAAAATCACCGTCAACCTCGCCCCCGCCGACCTGCCCAAAGAATCCGGCCGC
TTCGACCTGCCGATTGCACTCGGCATACTGGCCGCCTCGGGGCAGGTTATGGCCGACAAACTGGCGCAATACGAATTCGC
GGGCGAGCTGGCCCTATCGGGCGCGCTGCGCCCCGTGCGGGGTGCGCTGGCGATGGCCTGGCAGGGCATGAAGGCCGGCC
GCGCCTTTATCCTGCCGCAGCAAAATGCCGAACAGGCCGCCATCATCAACGGCATCACGGTTTACGGTGCCGGCAGCTTG
GGGCAGGTGGCCGCACACCTGAACGCCGTCGAACCGTTGGCGCAAACGCAGGCCGATATGGCGCAAAGGCCGTCTGAAAA
CCGCAGCCTGCACGATTTGAAAGACGTAAAAGGCCAGCACACCGCACGCCTGGCGTTGGAAATCGCCGCCGCCGGCGGCC
ACAGCCTGTTGATGATGGGGCCGCCCGGCACGGGTAAATCCATGCTCGCCCAGCGCCTGCCATCCATTCTGCCGCCGCTA
ACCGACGAAGAATTAATCGAAGTGTGGGCGTTGCGCTCGCTGCTGCCCAACCACAGGCAGGATTTGCACGGCCAACGGCC
TTTTCAAAGCCCCCACCATACTTCCAGCCCCGTGGCGGTGGTGGGCGGAAATGCCGGCCCCGGCGAAATTTCATTGGCCC
ACAACGGCATTTTGTTTTTAGACGAACTTCCCGAGTTTGACCGCAAGGTGCTGGAAGTGTTGCGCGAACCGCTGGAAACC
GGCGAAATCCATATTTCCCGCGCGGCGCACAAAGCCGTTTATCCCGCCGGATTCCAACTGGTTGCCGCCATGAACCCCTG
CCCCTGCGGCTATCTCGGCCACCCCGCCAAACCCTGCCGCTGCACACCCGAGAGCATCGCCCGCTACCGCGGCAAAATCT
CCGGCCCGCTGCTCGACCGCATCGACCTGACCATCGAAGTGCCCGCACTTTCCGCCGCCGAGCTGGCGCAGCAGCAGGCC
GGCGAGAGCAGCGCCGATGTGTCGGCGCGCGTGCGGGCCGCGCGCGAGCGGCAGTATGCCCGGCAGGGCAAGGTCAATGC
GGCCTTAAGCGTAACGGAACTGGACGAAACGGCGATGGTCTCTAAAGAGGCGCACGAAACGCTGGGCGGCCTGCTCGAAA
AACTCTCGCTTTCCGCCCGCAGCTACCACCGCATCATGCGTGTGGCGCGCACGCTGGCCGATTTGGGCGGCGACGAAGGC
GTCAGCCGCGCCCATGTGTTACGCGCGGTAAGTTTTCGTCGGGCTTTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X3DFT2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.293

100

0.538
  comM Vibrio campbellii strain DS40M4

52

100

0.524
  comM Haemophilus influenzae Rd KW20

50.2

100

0.506
  comM Glaesserella parasuis strain SC1401

49.602

100

0.502
  comM Legionella pneumophila str. Paris

46.548

100

0.476
  comM Legionella pneumophila strain ERS1305867

46.548

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.334

100

0.45