Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H3L92_RS00970 Genome accession   NZ_CP059570
Coordinates   213949..214248 (+) Length   99 a.a.
NCBI ID   WP_085366598.1    Uniprot ID   -
Organism   Neisseria dentiae strain DSM 19151     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 206451..215936 213949..214248 within 0


Gene organization within MGE regions


Location: 206451..215936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L92_RS00965 (H3L92_00965) - 212979..213832 (+) 854 WP_115336200.1 IS630 family transposase -
  H3L92_RS00970 (H3L92_00970) comE 213949..214248 (+) 300 WP_085366598.1 ComEA family DNA-binding protein Machinery gene
  H3L92_RS00980 (H3L92_00980) - 215205..215936 (+) 732 WP_085367207.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10016.76 Da        Isoelectric Point: 10.4815

>NTDB_id=470813 H3L92_RS00970 WP_085366598.1 213949..214248(+) (comE) [Neisseria dentiae strain DSM 19151]
MKHYLFGALAALAAPLLLAAVNINTATAEELKALPGIGPSKAAAIVAYREQNGPFKSVDDLQNVKGIGAGILAKLREEAT
VGAGAAKKAQPAVKKPAGK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=470813 H3L92_RS00970 WP_085366598.1 213949..214248(+) (comE) [Neisseria dentiae strain DSM 19151]
CTGAAACATTATCTCTTCGGTGCCCTGGCGGCACTGGCGGCACCGCTGCTGCTGGCGGCGGTGAACATCAACACCGCGAC
GGCGGAGGAGCTGAAGGCGCTGCCGGGGATAGGGCCGTCGAAGGCGGCGGCGATCGTGGCGTACCGTGAGCAGAACGGGC
CGTTCAAGAGCGTGGACGATTTGCAGAACGTGAAGGGGATAGGCGCGGGGATACTGGCGAAGCTGCGTGAGGAGGCGACG
GTGGGGGCCGGGGCGGCGAAGAAGGCGCAGCCCGCGGTGAAAAAACCGGCCGGTAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

61.053

95.96

0.586
  comE Neisseria gonorrhoeae MS11

61.053

95.96

0.586
  comE Neisseria gonorrhoeae MS11

61.053

95.96

0.586
  comE Neisseria gonorrhoeae MS11

61.053

95.96

0.586
  comEA Vibrio parahaemolyticus RIMD 2210633

47.727

88.889

0.424
  comEA Vibrio cholerae C6706

56.944

72.727

0.414
  comEA Vibrio cholerae strain A1552

56.944

72.727

0.414
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

78.788

0.394