Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H3L95_RS07040 Genome accession   NZ_CP059566
Coordinates   1458982..1459272 (-) Length   96 a.a.
NCBI ID   WP_009313167.1    Uniprot ID   A0A9X5U676
Organism   Neisseria sicca strain DSM 17713     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1453982..1464272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS07020 (H3L95_07020) - 1454607..1456058 (+) 1452 WP_003761818.1 DASS family sodium-coupled anion symporter -
  H3L95_RS07025 (H3L95_07025) - 1456163..1457044 (-) 882 WP_003761821.1 prephenate dehydrogenase -
  H3L95_RS07030 (H3L95_07030) - 1457235..1457486 (+) 252 WP_094105996.1 hypothetical protein -
  H3L95_RS07035 (H3L95_07035) rfaQ 1457431..1458537 (+) 1107 WP_003761828.1 putative lipopolysaccharide heptosyltransferase III -
  H3L95_RS07040 (H3L95_07040) comE 1458982..1459272 (-) 291 WP_009313167.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 9919.59 Da        Isoelectric Point: 10.5400

>NTDB_id=470735 H3L95_RS07040 WP_009313167.1 1458982..1459272(-) (comE) [Neisseria sicca strain DSM 17713]
MKKFLFAALSLLTASLSLAAVNINTASPSELEALPGIGPAKAKAIVDYRQQHGAFKSVEELKNVKGIGEGIFSKLKAEAT
VAPAAQNKAATPAAKK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=470735 H3L95_RS07040 WP_009313167.1 1458982..1459272(-) (comE) [Neisseria sicca strain DSM 17713]
ATGAAAAAATTCCTCTTTGCCGCCCTCTCCCTGCTGACCGCTTCGCTGTCGCTGGCCGCCGTCAACATCAATACCGCTTC
CCCGTCCGAGTTGGAAGCCCTGCCCGGTATCGGCCCTGCCAAAGCCAAAGCCATCGTGGACTACCGTCAACAACATGGTG
CCTTCAAATCGGTCGAGGAGTTGAAAAACGTCAAAGGTATCGGTGAGGGCATCTTCTCCAAACTGAAGGCGGAAGCAACC
GTCGCCCCGGCCGCTCAAAACAAAGCCGCCACCCCCGCCGCTAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

57.576

100

0.594
  comE Neisseria gonorrhoeae MS11

57.576

100

0.594
  comE Neisseria gonorrhoeae MS11

57.576

100

0.594
  comE Neisseria gonorrhoeae MS11

57.576

100

0.594
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.086

84.375

0.448
  comEA Vibrio parahaemolyticus RIMD 2210633

45.349

89.583

0.406
  comEA Staphylococcus aureus N315

57.377

63.542

0.365
  comEA Staphylococcus aureus MW2

57.377

63.542

0.365