Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   H2677_RS01325 Genome accession   NZ_CP059558
Coordinates   277466..279604 (+) Length   712 a.a.
NCBI ID   WP_212639560.1    Uniprot ID   A0AAX1ML98
Organism   Acinetobacter junii strain YR7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 272466..284604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2677_RS01305 (H2677_01305) pilM 274438..275496 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  H2677_RS01310 (H2677_01310) pilN 275496..276140 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  H2677_RS01315 (H2677_01315) pilO 276137..276877 (+) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  H2677_RS01320 (H2677_01320) pilP 276877..277404 (+) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  H2677_RS01325 (H2677_01325) pilQ 277466..279604 (+) 2139 WP_212639560.1 type IV pilus secretin PilQ family protein Machinery gene
  H2677_RS01330 (H2677_01330) aroK 279624..280184 (+) 561 WP_004909618.1 shikimate kinase AroK -
  H2677_RS01335 (H2677_01335) aroB 280205..281287 (+) 1083 WP_212638995.1 3-dehydroquinate synthase -
  H2677_RS01340 (H2677_01340) - 281304..282182 (+) 879 WP_099947984.1 hypothetical protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 77220.59 Da        Isoelectric Point: 5.7176

>NTDB_id=470581 H2677_RS01325 WP_212639560.1 277466..279604(+) (pilQ) [Acinetobacter junii strain YR7]
MNHAFRQFSMAAVAIAISQVASAQVGITNIVPMNLGDQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKAQQNLKQTSI
PVLTNEASSINVAADDQRARLIVNLKDSGAFTTRVEGNTFVLKINSAKPTLISNPTVATRQVQQGVSNIGFQRGNQGEGL
VVIDLLGGNTPVDVQQQGSKIVVRTIGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVVTIQSAGSYEYMAYQAENKL
TISLKRPEDKSPNKAKPQSYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVTELIKAEEDEAKAIAQSVKLSPLQTEYIQLSYAKAADIEKLITQGKNGSGSGNRNQGVNDLLGDS
VGSLLSPRGTVSIDPRTNTLIVNDTSQKIDQIRKMIDLLDVSVKQVMIEARIVRASTDFTKEMGVKWGILSKGVASNNDL
LVGGSDTTLWNLREPSEDSETGGWKYDIERPDNLNVNLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPK
VLTADKQAAKIESGTQIPYSSSTGGGANAVPKTEFIDATLSLDVTPSITPEGKVMMKLNITKDSPGTPTPTGQLTINKNT
IDTNVVVDNGETVVLGGIFEQENINSQTKVPFLGDLPYVGKLFRRESKQDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=470581 H2677_RS01325 WP_212639560.1 277466..279604(+) (pilQ) [Acinetobacter junii strain YR7]
ATGAATCATGCATTCCGTCAATTTTCTATGGCTGCGGTTGCAATTGCTATTTCGCAAGTAGCTTCGGCACAGGTGGGTAT
TACAAATATTGTGCCGATGAACTTGGGTGATCAGGGTACTGAAATCAGAGTCATGTTTAATGGTTTGCCTCCTCAACCAC
AGGCCTATCAACTTGAGCAGCCTGCTCGTTTAATTTTAGATTTTGATAAGGCTCAGCAGAACTTAAAGCAAACATCTATT
CCTGTTTTAACCAATGAGGCAAGTTCCATTAATGTAGCTGCAGATGATCAGCGTGCTCGTTTAATCGTGAATTTAAAAGA
CTCGGGTGCTTTCACAACCCGTGTTGAAGGTAATACTTTTGTTTTAAAAATAAATTCTGCAAAACCAACATTAATCAGTA
ATCCTACGGTTGCTACTCGACAAGTTCAACAAGGTGTTTCCAATATTGGTTTTCAAAGAGGAAATCAAGGTGAGGGGTTA
GTTGTTATTGATTTATTGGGAGGTAATACACCAGTAGATGTACAGCAACAGGGGAGTAAAATTGTTGTTCGCACTATTGG
AAATAAAATCCCAACTCACTTGGCCCGTCGTTTAAATACTAATGATTTTGCGACCCCAGTAGCAAGTATTGATGCTTATA
ACGACAAAGGAAATGGGGTTGTTACTATTCAATCTGCAGGTAGCTATGAGTACATGGCTTATCAGGCAGAGAACAAACTT
ACAATTAGTTTAAAAAGACCAGAAGATAAGTCACCGAATAAAGCTAAACCACAAAGTTATACTGGAAATAAAATTTCATT
AGATTTCCAAGATATCGAGGTTCGTCGTGTTTTGCAGTTGTTAGCGGATTTTACGGGAATTAACATGGTTGCTGCTGATA
CTGTACAAGGAAATATTACGCTACGTCTTAAAGATGTTCCTTGGGATCAAGCTCTTGACATTGTTTTAAAAACAAAAAAT
CTAGATAAGCGTCGTAATGGAAATGTAATTTGGATTGCACCAGTTACGGAGTTGATCAAAGCGGAAGAAGATGAAGCGAA
GGCAATCGCTCAAAGTGTGAAACTTTCACCTTTGCAGACAGAATATATTCAATTGAGTTATGCGAAAGCAGCAGATATAG
AGAAACTCATCACTCAAGGTAAAAATGGCTCAGGTAGTGGTAATCGTAATCAGGGAGTTAATGATCTTTTAGGGGATAGT
GTGGGGAGTTTATTGAGTCCACGTGGAACTGTTTCGATTGACCCTCGGACTAACACATTGATTGTAAATGATACTTCTCA
GAAAATTGATCAGATCCGTAAAATGATCGATTTACTTGATGTATCGGTTAAACAGGTGATGATTGAAGCGCGTATTGTGC
GTGCGAGTACTGACTTTACTAAGGAAATGGGGGTGAAGTGGGGGATTTTATCTAAAGGAGTAGCATCGAATAATGACTTG
CTAGTTGGTGGTAGTGATACAACTTTATGGAATTTACGGGAACCAAGTGAGGACAGTGAAACAGGTGGTTGGAAATATGA
TATTGAACGTCCAGATAACTTAAATGTGAATTTAGGTGCTGTAACCCCTGGAGCAAGTCGTATTGCTTTTGGTTTAATTA
GTCTTTCAGACTTTATGTTGGACCTAGAGTTGTCAGCAGTTCAAGCTGATGGTTATGGTGAGGTGATTTCGACTCCGAAA
GTTCTAACTGCTGATAAGCAAGCTGCAAAAATTGAATCAGGAACTCAAATTCCTTATTCATCTTCTACGGGTGGTGGAGC
TAATGCGGTTCCAAAAACTGAATTTATTGATGCGACCTTAAGTTTGGATGTTACACCGAGTATCACTCCTGAAGGTAAGG
TGATGATGAAATTAAACATCACTAAAGATTCACCAGGAACGCCAACACCTACAGGGCAGTTGACGATTAATAAAAATACG
ATTGATACCAATGTTGTGGTTGATAATGGTGAAACTGTTGTTCTTGGTGGAATTTTTGAGCAAGAAAATATTAATTCTCA
GACCAAAGTTCCATTCTTGGGTGATTTGCCTTATGTTGGGAAATTATTCCGTAGAGAGTCTAAACAAGACAATAAACGCG
AGTTGCTTATTTTTGTTACGCCGAGAATTGTTAATGACACTTTGACAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(546-704)

Secretin and TonB N terminus short domain (STN)

(292-334)

AMIN domain (AMIN)

(37-122)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.034

100

0.764
  pilQ Acinetobacter baumannii strain A118

75.034

100

0.764
  comQ Acinetobacter baylyi ADP1

72.778

100

0.736
  pilQ Pseudomonas aeruginosa PAK

40.719

97.612

0.397
  pilQ Legionella pneumophila strain ERS1305867

39.053

94.944

0.371
  pilQ Legionella pneumophila strain Lp02

38.872

94.663

0.368